I've forked the repo so I can run it offline working on Linux Mint, and I'm having some issues with the numpy version. Requirements.txt has the numpy requirement as "numpy>=1.26.3,<2.0" and when I ran pip install -r requirements.txt it installed numpy 1.26.3. However, when I try streamlit run ABRA.py it gives this error:
ImportError: cannot import name 'trapezoid' from 'numpy' (.../miniconda3/envs/abranalysis/lib/python3.11/site-packages/numpy/__init__.py)
File ".../abranalysis/ABRA.py", line 9, in <module>
from utils.plotting import *
File ".../abranalysis/utils/plotting.py", line 5, in <module>
import fdasrsf as fs
File ".../miniconda3/envs/abranalysis/lib/python3.11/site-packages/fdasrsf/__init__.py", line 124, in <module>
from .umap_metric import efda_distance, efda_distance_curve
File ".../miniconda3/envs/abranalysis/lib/python3.11/site-packages/fdasrsf/umap_metric.py", line 13, in <module>
from numpy import (
This is apparently because it was called 'trapz' instead 'trapezoid' before numpy 2.0. If I upgrade to numpy 2.0, I get a different error: ImportError: numpy.core.umath failed to import
The terminal logs include the note:
A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.0.0 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.
I imagine the numpy 'trapezoid' error is easier to fix than an entire module being compiled for an older version of numpy so I'll work on figuring that out, but if you already have a fix, that would save me some time.
I've forked the repo so I can run it offline working on Linux Mint, and I'm having some issues with the numpy version. Requirements.txt has the numpy requirement as "numpy>=1.26.3,<2.0" and when I ran
pip install -r requirements.txtit installed numpy 1.26.3. However, when I trystreamlit run ABRA.pyit gives this error:This is apparently because it was called 'trapz' instead 'trapezoid' before numpy 2.0. If I upgrade to numpy 2.0, I get a different error:
ImportError: numpy.core.umath failed to importThe terminal logs include the note:
I imagine the numpy 'trapezoid' error is easier to fix than an entire module being compiled for an older version of numpy so I'll work on figuring that out, but if you already have a fix, that would save me some time.