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README.md

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# Intro to snakemake
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This repository contains a couple of examples which are useful for learning about snakemake
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## `git clone https://github.com/um-dang/intro-to-snakemake`
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This repository contains some examples which can be useful exercises when learning snakemake, covering the core functionality and a few of its salient features.
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Examples:
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* [Toy example](toy_example/)
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* [Bioinformatics example - RNASeq](human_chr22)
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1. [Toy example](toy_example/)
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2. [Bioinformatics example - RNASeq](human_chr22)
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<details><summary>Expand - Why use snakemake?</summary>
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* make-like framework **in python**
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* Built-in environment management compatibility (conda, singularity)
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* Flexible dispatch of pipeline steps allows portability across compute environments (laptop, cluster, cloud)
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</details>

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