{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":649092539,"defaultBranch":"main","name":"manuscript-mag-net","ownerLogin":"uw-maccosslab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-03T18:49:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/57009783?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1707982278.0","currentOid":""},"activityList":{"items":[{"before":"dc2b682b213f48df4bccaba7cfa1ad5e9ce34dd1","after":"f2a279a1e3f0a48219c0ad7dd49159d8dc1b74e2","ref":"refs/heads/main","pushedAt":"2024-08-19T21:01:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Update README.md\n\nUpdating figure numbers to match manuscript revisions","shortMessageHtmlLink":"Update README.md"}},{"before":"43c04024ec0399044420f78be69f044e11144e00","after":"dc2b682b213f48df4bccaba7cfa1ad5e9ce34dd1","ref":"refs/heads/main","pushedAt":"2024-08-19T20:40:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Adding Supp Fig S3 input files","shortMessageHtmlLink":"Adding Supp Fig S3 input files"}},{"before":"923c97338a29d4b035a2934fecfff8c0eb94b302","after":"43c04024ec0399044420f78be69f044e11144e00","ref":"refs/heads/main","pushedAt":"2024-08-19T20:38:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/uw-maccosslab/Mag-Net","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/uw-maccosslab/Mag-Net"}},{"before":"c303a8cc06837ce8e60f2821f4681d8a337f176a","after":"923c97338a29d4b035a2934fecfff8c0eb94b302","ref":"refs/heads/main","pushedAt":"2024-06-24T18:25:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Update README.md\n\nAdding information on scripts and associated input files","shortMessageHtmlLink":"Update README.md"}},{"before":"08a0412b4ae0ccebaee1741a5f63eb4addc17a65","after":"c303a8cc06837ce8e60f2821f4681d8a337f176a","ref":"refs/heads/main","pushedAt":"2024-06-24T14:41:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeapark","name":"Jea Park","path":"/jeapark","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29589535?s=80&v=4"},"commit":{"message":"Delete","shortMessageHtmlLink":"Delete"}},{"before":"47e5aa8de69a04aeccce6ddbd673b6ee08593ad3","after":"08a0412b4ae0ccebaee1741a5f63eb4addc17a65","ref":"refs/heads/main","pushedAt":"2024-06-24T14:39:13.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jeapark","name":"Jea Park","path":"/jeapark","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29589535?s=80&v=4"},"commit":{"message":"add documentation","shortMessageHtmlLink":"add documentation"}},{"before":"4dd080596bc914f6cf3c7bad7a3c029beff51028","after":"47e5aa8de69a04aeccce6ddbd673b6ee08593ad3","ref":"refs/heads/main","pushedAt":"2024-06-22T13:12:40.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jeapark","name":"Jea Park","path":"/jeapark","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29589535?s=80&v=4"},"commit":{"message":"Delete 20230812-particlesADPD_pilot-batchadj-Prot.csv","shortMessageHtmlLink":"Delete 20230812-particlesADPD_pilot-batchadj-Prot.csv"}},{"before":"a44fffc0b74bb5867ed2af6c73cd05d330b89b6d","after":"4dd080596bc914f6cf3c7bad7a3c029beff51028","ref":"refs/heads/main","pushedAt":"2024-06-12T21:11:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justin-a-sanders","name":null,"path":"/justin-a-sanders","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60298590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"a0b82277492aca96d6803e238dd08f87f1bf7982","after":"a44fffc0b74bb5867ed2af6c73cd05d330b89b6d","ref":"refs/heads/main","pushedAt":"2024-06-12T21:08:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justin-a-sanders","name":null,"path":"/justin-a-sanders","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60298590?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"e8b9c493f0f40a8e38ce65a6151c961804acc7f5","after":"a0b82277492aca96d6803e238dd08f87f1bf7982","ref":"refs/heads/main","pushedAt":"2024-04-08T19:31:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlplubell","name":null,"path":"/dlplubell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56811545?s=80&v=4"},"commit":{"message":"Update Fig2c_Fig4a_Fig4b.r to include Fig7a code","shortMessageHtmlLink":"Update Fig2c_Fig4a_Fig4b.r to include Fig7a code"}},{"before":"ebb587bc6446325da8d0ca8b87ecb51fefc22536","after":"e8b9c493f0f40a8e38ce65a6151c961804acc7f5","ref":"refs/heads/main","pushedAt":"2024-04-08T19:26:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlplubell","name":null,"path":"/dlplubell","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/56811545?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"f61c269c6472f01b539e3b8d5c0ca9abe547dd36","after":"ebb587bc6446325da8d0ca8b87ecb51fefc22536","ref":"refs/heads/main","pushedAt":"2024-04-05T20:25:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeapark","name":"Jea Park","path":"/jeapark","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29589535?s=80&v=4"},"commit":{"message":"Update README.md\n\nadd descriptions for `main.r`","shortMessageHtmlLink":"Update README.md"}},{"before":"52bcd92d060af03e72f04accebf15142995bf5d9","after":"f61c269c6472f01b539e3b8d5c0ca9abe547dd36","ref":"refs/heads/main","pushedAt":"2024-04-05T20:01:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jeapark","name":"Jea Park","path":"/jeapark","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29589535?s=80&v=4"},"commit":{"message":"init\n\ndata wrangling and normalization scripts","shortMessageHtmlLink":"init"}},{"before":"065e1947c1778098430476ca76c79cd864f0ebeb","after":"52bcd92d060af03e72f04accebf15142995bf5d9","ref":"refs/heads/main","pushedAt":"2024-04-04T02:56:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Update README.md\n\nAdding Figure 7, Supplemental Figures 7-10","shortMessageHtmlLink":"Update README.md"}},{"before":"c068043ed69626493eb7dace2afc4912cbad19a7","after":"065e1947c1778098430476ca76c79cd864f0ebeb","ref":"refs/heads/main","pushedAt":"2024-04-04T02:30:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Minor update to Rmd files. Label corrections, streamline output.","shortMessageHtmlLink":"Minor update to Rmd files. Label corrections, streamline output."}},{"before":"211f9a06b12860b030267a5e6dfa71edfc942403","after":"c068043ed69626493eb7dace2afc4912cbad19a7","ref":"refs/heads/main","pushedAt":"2024-02-15T07:40:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Update README.md\n\nAdded information on Fig_7C__SuppFigs_S7_S8_S9.Rmd","shortMessageHtmlLink":"Update README.md"}},{"before":"cd5b8c273c85860cca2727376bcddf9a1d331d82","after":"211f9a06b12860b030267a5e6dfa71edfc942403","ref":"refs/heads/main","pushedAt":"2024-02-15T07:31:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Uploading new Rmd with AD/PD boxplots\n\nUploading R Markdown file \"Fig_7C__SuppFigs_S7_S8_S9.Rmd\" that generates box plots in Figure 7C and Supplementary Figures S7, S8, and S9.","shortMessageHtmlLink":"Uploading new Rmd with AD/PD boxplots"}},{"before":"70a67c1115e1d6f838a745c21aed927cc0216a19","after":"cd5b8c273c85860cca2727376bcddf9a1d331d82","ref":"refs/heads/main","pushedAt":"2024-02-15T07:29:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Input for boxplot script, updated Protein_List\n\nUploaded input for \"Fig_7C__SuppFigs_S7_S8_S9.Rmd\" file including updated version of Protein_List which is also used in \"Figs_2C_3A_3B_5B__SuppFigs_S1_S5_S6.Rmd\".","shortMessageHtmlLink":"Input for boxplot script, updated Protein_List"}},{"before":"3b605a53bc92affcc3f6be0491a9809d6901b19c","after":"70a67c1115e1d6f838a745c21aed927cc0216a19","ref":"refs/heads/main","pushedAt":"2023-12-18T23:33:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"justin-a-sanders","name":null,"path":"/justin-a-sanders","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60298590?s=80&v=4"},"commit":{"message":"Add notebook for figure 7 analysis","shortMessageHtmlLink":"Add notebook for figure 7 analysis"}},{"before":"e6511116e544e2f6be6d20c70930fb4779778e67","after":"3b605a53bc92affcc3f6be0491a9809d6901b19c","ref":"refs/heads/main","pushedAt":"2023-09-08T17:56:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Transfer method update","shortMessageHtmlLink":"Transfer method update"}},{"before":"61a3756eb4cf3640b7618666e3ac0f90644696e0","after":"e6511116e544e2f6be6d20c70930fb4779778e67","ref":"refs/heads/main","pushedAt":"2023-09-08T17:53:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Update Apex Files","shortMessageHtmlLink":"Update Apex Files"}},{"before":"2f37ad34b6961894711c976f8a16e807e72fca7f","after":"61a3756eb4cf3640b7618666e3ac0f90644696e0","ref":"refs/heads/main","pushedAt":"2023-09-08T17:52:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"0a4f35c36ae1af859908533f933e83d91904a2f3","after":"2f37ad34b6961894711c976f8a16e807e72fca7f","ref":"refs/heads/main","pushedAt":"2023-09-08T16:14:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Update of KFKF protocol","shortMessageHtmlLink":"Update of KFKF protocol"}},{"before":"db09cff17d7a86134838e0e262febc0791841baf","after":"0a4f35c36ae1af859908533f933e83d91904a2f3","ref":"refs/heads/main","pushedAt":"2023-09-08T16:07:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Fixed Apex Methods","shortMessageHtmlLink":"Fixed Apex Methods"}},{"before":"2fd9e39083813f1a4d35765393c6697b68df076d","after":"db09cff17d7a86134838e0e262febc0791841baf","ref":"refs/heads/main","pushedAt":"2023-07-12T23:02:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Update Protocols","shortMessageHtmlLink":"Update Protocols"}},{"before":"4df863ef09e364727c9a5d559f5f2bf5fc34a475","after":"2fd9e39083813f1a4d35765393c6697b68df076d","ref":"refs/heads/main","pushedAt":"2023-07-12T22:55:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"updated Kingfisher methods","shortMessageHtmlLink":"updated Kingfisher methods"}},{"before":"4e013b0dc74bd54677764a8db613bb19ecea8364","after":"4df863ef09e364727c9a5d559f5f2bf5fc34a475","ref":"refs/heads/main","pushedAt":"2023-06-26T23:00:49.512Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"Update README.md\n\nUpdating README.md to cover KF methods and the two scripts in \"bin\" plus their input files in \"csv\" which were uploaded on June 3.","shortMessageHtmlLink":"Update README.md"}},{"before":"40431c77f0441109b4a03d66a5ab3f54034cd392","after":"4e013b0dc74bd54677764a8db613bb19ecea8364","ref":"refs/heads/main","pushedAt":"2023-06-10T03:17:23.077Z","pushType":"push","commitsCount":1,"pusher":{"login":"maccoss","name":"Mike MacCoss","path":"/maccoss","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40654111?s=80&v=4"},"commit":{"message":"Update Kingfisher Methods","shortMessageHtmlLink":"Update Kingfisher Methods"}},{"before":"6419b5f86a4334cd216f7e3284ca426bcdeb99d2","after":"40431c77f0441109b4a03d66a5ab3f54034cd392","ref":"refs/heads/main","pushedAt":"2023-06-04T03:24:03.856Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"input for Figs_2C_3A_3B_5B__SuppFigs_S1_S5_S6.Rmd\n\n6/8 input files for the R Markdown file \"Figs_2C_3A_3B_5B__SuppFigs_S1_S5_S6.Rmd\". The remaining two files - \"FT_TICnormalized_LongForm_Peptide_NormArea_Long.csv\" and \"MMCC_EV_Eclipse_Peptide_Long_TAF_NoNorm.csv\", can be found on Panoramaweb as they were too large to upload here.","shortMessageHtmlLink":"input for Figs_2C_3A_3B_5B__SuppFigs_S1_S5_S6.Rmd"}},{"before":"929555268f464670d6c34541d96865885696a81b","after":"6419b5f86a4334cd216f7e3284ca426bcdeb99d2","ref":"refs/heads/main","pushedAt":"2023-06-04T03:16:42.717Z","pushType":"push","commitsCount":1,"pusher":{"login":"K-Tsantilas","name":"Kristine Tsantilas","path":"/K-Tsantilas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/94341246?s=80&v=4"},"commit":{"message":"R markdown - figures and supplement\n\nUploading R markdown file to generate Figures 2C, 3A, 3B, 5B, and Supplementary Figures S1, S5 and S6.","shortMessageHtmlLink":"R markdown - figures and supplement"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEnnIkeQA","startCursor":null,"endCursor":null}},"title":"Activity ยท uw-maccosslab/manuscript-mag-net"}