From 7b25785af97f188a609d4deb20c41b2df151dc54 Mon Sep 17 00:00:00 2001
From: Lee de Mora <ledm@pml.ac.uk>
Date: Thu, 19 Oct 2023 09:43:18 +0100
Subject: [PATCH] Added new mission atlantic code.

---
 bgcval2/default-bgcval2-config.yml   |   2 +-
 input_yml/mission_atlantic_CNRM.yml  |  46 +++++++++++
 input_yml/mission_atlantic_GS1p0.yml | 112 +++++++++++++++++++++++++++
 3 files changed, 159 insertions(+), 1 deletion(-)
 create mode 100644 input_yml/mission_atlantic_CNRM.yml
 create mode 100644 input_yml/mission_atlantic_GS1p0.yml

diff --git a/bgcval2/default-bgcval2-config.yml b/bgcval2/default-bgcval2-config.yml
index 2d2cfa58..4571f81d 100644
--- a/bgcval2/default-bgcval2-config.yml
+++ b/bgcval2/default-bgcval2-config.yml
@@ -70,7 +70,7 @@ standard-paths:
       p2p_ppDir: "/local1/data/scratch/ledm/bgcval2_postProcessed"
       imagedir: "images"
         #ModelFolder_pref: "gle/dare_baseline" #AMM7
-      ModelFolder_pref: "ledm/MissionAtlantic/SENEMO"
+      ModelFolder_pref: "ledm/MissionAtlantic/"
       orcaGridfn: "/data/proteus2/scratch/ledm/MissionAtlantic/SENEMO/eORCA025_mesh_mask_mes_v2.nc"
       amm7Gridfn: "/users/modellers/ledm/workspace/coast/AMM7_grid/mesh_mask.nc"  
       ObsFolder: "/data/sthenno1/scratch/ledm/Observations/"
diff --git a/input_yml/mission_atlantic_CNRM.yml b/input_yml/mission_atlantic_CNRM.yml
new file mode 100644
index 00000000..f2d1546d
--- /dev/null
+++ b/input_yml/mission_atlantic_CNRM.yml
@@ -0,0 +1,46 @@
+---
+# GC5 N96 ORCA1 spinup analysis
+name: MissionAtlantic_CNRM
+
+# Run the single job analysis
+do_analysis_timeseries: True 
+
+# Download from mass:
+do_mass_download: False
+
+# Strict file check (fails if True and files are missing)
+strictFileCheck: False
+
+# master analysis suite
+master_suites: missionatlantic
+
+# Auto download jobs (can also be set for individual jobs).
+auto_download: False
+
+# Job ID's suites as named by Rose/Cylc
+jobs:
+  CNRM_hist:
+        description: 'CNRM historical run.'
+        colour: green  
+        thickness: 1.8
+        linestyle: '-'
+        shifttime: 0.
+        suite: missionatlantic
+
+  CNRM_ssp370:
+        description: 'CNRM SSP3-7.0'
+        colour: purple
+        thickness: 1.8
+        linestyle: '-'
+        shifttime: 0.
+        suite: missionatlantic
+
+  CNRM_ssp126:
+        description: 'CNRM SSP1-2.6'
+        colour: dodgerblue
+        thickness: 1.8
+        linestyle: '-'
+        shifttime: 0.
+        suite: missionatlantic
+
+
diff --git a/input_yml/mission_atlantic_GS1p0.yml b/input_yml/mission_atlantic_GS1p0.yml
new file mode 100644
index 00000000..4e3f150b
--- /dev/null
+++ b/input_yml/mission_atlantic_GS1p0.yml
@@ -0,0 +1,112 @@
+---
+# GC5 N96 ORCA1 spinup analysis
+name: MissionAtlantic_GS1p0
+
+# Run the single job analysis
+do_analysis_timeseries: True 
+
+# Download from mass:
+do_mass_download: False
+
+# Strict file check (fails if True and files are missing)
+strictFileCheck: False
+
+# master analysis suite
+master_suites: missionatlantic
+
+# Auto download jobs (can also be set for individual jobs).
+auto_download: False
+
+# Job ID's suites as named by Rose/Cylc
+jobs:
+     GS1p0_hind:
+        description: 'NEMO-ERSEM eORCA025 - GS1p0_hind'
+        colour: green  
+        thickness: 1.8
+        linestyle: '-'
+        shifttime: 0.
+        suite: missionatlantic
+
+#     test17a:
+#        description: 'NEMO-ERSEM eORCA025 - with iron deposition x0.1'
+#        colour: red  
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 0.
+#        suite: missionatlantic
+
+#    test17aa:
+#       description: 'NEMO-ERSEM eORCA025 - with iron deposition x0.59 spinup year 1'
+#       colour: blue
+#       thickness: 1.7
+#       linestyle: '-'
+#       shifttime: 0.
+#       suite: missionatlantic
+#    test17b:
+#       description: 'NEMO-ERSEM eORCA025 - with iron deposition x0.59 spinup year 2'
+#       colour: blue
+#       thickness: 1.7
+#       linestyle: '-'
+#       shifttime: 1.
+#       suite: missionatlantic
+#    test17c:
+#       description: 'NEMO-ERSEM eORCA025 - with iron deposition x0.59 spinup year 3'
+#       colour: blue
+#       thickness: 1.7
+#       linestyle: '-'
+#       shifttime: 2.
+#       suite: missionatlantic
+
+# Broken with weird DIC/pH
+#     test18a:
+#        description: 'NEMO-ERSEM eORCA025 - new river input - spinup year 1'
+#        colour: purple
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 0.
+#        suite: missionatlantic
+#     test18b:
+#        description: 'NEMO-ERSEM eORCA025 - new river input - spinup year 2'
+#        colour: purple
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 1.
+#        suite: missionatlantic
+#     test18c:
+#        description: 'NEMO-ERSEM eORCA025 - new river input - spinup year 3'
+#        colour: purple
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 2.
+#        suite: missionatlantic
+
+#     test19_S1:
+#        description: 'NEMO-ERSEM eORCA025 - same as 18 but better - spinup year 1'
+#        colour: orange
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 0.
+#        suite: missionatlantic
+#     test19_S2:
+#        description: 'NEMO-ERSEM eORCA025 - same as 18 but better - spinup year 2'
+#        colour: orange
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 1.
+#        suite: missionatlantic
+#     test19_S3:
+#        description: 'NEMO-ERSEM eORCA025 - same as 18 but better - spinup year 3'
+#        colour: orange
+#        thickness: 1.7
+#        linestyle: '-'
+#        shifttime: 2.
+#         suite: missionatlantic
+
+     test25:
+        description: 'NEMO-ERSEM eORCA025 - stable(?!)'
+        colour: purple
+        thickness: 1.7
+        linestyle: '-'
+        shifttime: 02.
+        suite: missionatlantic
+