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Normalization of .hic files #62

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aminakur opened this issue Aug 30, 2023 · 1 comment

aminakur commented Aug 30, 2023 •

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I have two unbalanced .hic files generated by Juicer. I used chess-sim with the following command:

chess sim --background-query -p 24 /az_new/az_new.hic@2000@KR \
    /NPB_new/NPB_new.hic@2000@KR \
    az_npb_SBs.bedpe az_npb_syntenic_2kb.tsv

Dies the @kr work in this code? Would it compare the normalized matrices as a result?

The text was updated successfully, but these errors were encountered:

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kaukrise commented Aug 31, 2023

CHESS uses FAN-C to load Juicer matrices, so yes, the command above should compare KR-normalised 2kb resolution matrices.

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