- Add settings to consider self-loops when computing Laplacians #64 (@smoia @pre-commit-ci[bot])
- docs: Save DOI badge version #64 (@smoia)
- Add codespell to code checks #60 (@smoia)
- Attempt to fix the auto release error #61 (@smoia)
- int: update CI/CD Ubuntu version #58 (@smoia)
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- [pre-commit.ci] pre-commit autoupdate #56 (@pre-commit-ci[bot])
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- fix: If the matrix diagonal is zeroed, zero the identity matrix (@smoia)
- Stefano Moia (@smoia)
🎉 This release contains work from a new contributor! 🎉
Thank you, null@NawalK, for all your work!
- Add map of filetypes to related loading functions for matricial data (
io.LOADMAT_DICT
) #55 (@smoia) - Add outflow random walk normalisation (and specify former random walk as inflow random walk) #54 (@smoia)
- [pre-commit.ci] pre-commit autoupdate #53 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #51 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #50 (@pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #49 (@pre-commit-ci[bot])
- @NawalK
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Adjust
io.load_nifti_get_mask
to expect 4 dimensions in timeseries and 3 in masks by default #48 (@smoia)
- [pre-commit.ci] pre-commit autoupdate #47 (@pre-commit-ci[bot])
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Make FC a metric with optional computation #24 (@smoia @pre-commit-ci[bot])
- [pre-commit.ci] pre-commit autoupdate #46 (@pre-commit-ci[bot])
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- Bump actions/checkout from 2 to 3 #44 (@dependabot[bot])
- Bump actions/setup-python from 2 to 4 #45 (@dependabot[bot])
- @dependabot[bot]
- Stefano Moia (@smoia)
- Add dependabot config to keep GitHub actions up-to date #42 (@mscheltienne)
- Mathieu Scheltienne (@mscheltienne)
🎉 This release contains work from a new contributor! 🎉
Thank you, Mathieu Scheltienne (@mscheltienne), for all your work!
- Synchronise required packages versions and add DS_Store to .gitignore #41 (@mscheltienne)
- [pre-commit.ci] pre-commit autoupdate #39 (@pre-commit-ci[bot])
- @pre-commit-ci[bot]
- Mathieu Scheltienne (@mscheltienne)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Fix initialisation (remove test packages) #37 ([email protected])
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Add possibility (1) to specify which diagonal to use for matrices symmetric normalisation and (2) to avoid "0" elements in the diagonal #29 (@smoia)
- Add duecredit to keep track of citations #27 (@smoia)
- int: Bump up github-action-x/commit to 2.9 #27 (@smoia)
- Remove auto restyling in tests and PR merges given pre-commit #33 (@smoia)
- Fix diagonal matrix check in
operations.laplacian.symmetric_normalisation
#32 (@smoia)
- Add isort, flake8, pydocstyle, and rst pre-coomit hooks (and dev dependencies) #31 (@smoia)
- Add pre-commit to repository #30 (@smoia @pre-commit-ci[bot])
- @pre-commit-ci[bot]
- Stefano Moia (@smoia)
- docs: Update documentation home page (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Stefano Moia (@smoia)
- Allow users to choose p value for both frequentist and Bernoulli's approach at all time. #13 (@smoia)
- Stefano Moia (@smoia)
- Improve random seed generator initialisation following latest recommendations and bump up required numpy version #12 (@smoia)
- Stefano Moia (@smoia)
- Change name of function
if_declare_force_type
tochange_var_type
to better match its new scope. #10 (@smoia)
- Stefano Moia (@smoia)
- fix: Fix random seed initialisation (@smoia)
- Do not save cache in CI builds (not needed) #9 (@smoia)
- Fix coverage settings to exclude tests and other minor elements #8 (@smoia)
- Fix coverage list #6 (@smoia)
- Stefano Moia (@smoia)
- Update README.md (@smoia)
- Stefano Moia (@smoia)
- Update README.md (@smoia)
- Stefano Moia (@smoia)
🎉 This release contains work from a new contributor! 🎉
Thank you, Stefano Moia (@smoia), for all your work!
- Update
auto
configuration and enable CD workflows #1 ([email protected] @smoia)
- Fix internal settings ([email protected])
- Fix matrices loading ([email protected])
- Remove initial check on var ([email protected])
- Fix tests ([email protected])
- Improve data interpretation ([email protected])
- Fix node strength computation ([email protected])
- Fix extension check ([email protected])
- Fix testdir ([email protected])
- Fix integration test and add configuration ([email protected])
- Improve markerplot creation and force nilearn to be at least 0.7 ([email protected])
- Add markerplot plot as a block ([email protected])
- Fix markerplot creation and add plot of masked metrics ([email protected])
- Fix matrix export ([email protected])
- Workflow debug, plot metric nodes, improve logger ([email protected])
- Improve plot log text ([email protected])
- Generalise functions by allowing 4+ dimensions to be worked with ([email protected])
- Fix statistical tests and improve logging ([email protected])
- Fix surrogate creation for 3+D ([email protected])
- Fix atlas unfolding ([email protected])
- Set default metric average to False ([email protected])
- Fix metric calculation in objects ([email protected])
- Fix log messages in io ([email protected])
- Add seed and fix surrogates flags ([email protected])
- Fix GSDI export ([email protected])
- Debug 2 ([email protected])
- Fix outdir path generation when missing input ([email protected])
- Fix integration import ([email protected])
- Change workflow script name to avoid python confusions ([email protected])
- Fix commonpath attribution ([email protected])
- Ignore idea folder ([email protected])
- Debug 1 ([email protected])
- Add optional arguments in CLI ([email protected])
- Fix imports ([email protected])
- Fix message ([email protected])
- Add integration test ([email protected])
- Update p value ([email protected])
- Update name! ([email protected])
- Fix statistical test ([email protected])
- Fix fourier transformation ([email protected])
- Remove some action comments ([email protected])
- Remove unused imports ([email protected])
- Other minor fixes and check inputs in workflows ([email protected])
- !!! Fix graph projection creation and change name to fourier transform ([email protected])
- Add more tests and test files ([email protected])
- Add parser ([email protected])
- Little export progresses ([email protected])
- Main development ([email protected])
- More internal settings, start workflow ([email protected])
- Bunch of internal settings ([email protected])
- Initial commit (@smoia)
- smoia ([email protected])
- Stefano Moia (@smoia)