vcfgenotypecompare.md

% VCFGENOTYPECOMPARE(1) vcfgenotypecompare (vcflib) | vcfgenotypecompare (VCF statistics) % Erik Garrison and vcflib contributors

NAME

vcfgenotypecompare

SYNOPSIS

vcfgenotypecompare

DESCRIPTION

adds statistics to the INFO field of the vcf file describing the amount of discrepancy between the genotypes (GT) in the vcf file and the genotypes reported in the . use this after vcfannotategenotypes to get correspondence statistics for two vcfs.

OPTIONS

Type: statistics

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfgenotypecompare.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.