vcfglbound.md

% VCFGLBOUND(1) vcfglbound (vcflib) | vcfglbound (VCF transformation) % Erik Garrison and vcflib contributors

NAME

vcfglbound

SYNOPSIS

vcfglbound [options]

DESCRIPTION

Adjust GLs so that the maximum GL is 0 by dividing all GLs for each sample by the max.

OPTIONS

Then cap (bound) at N (e.g. -10).options:
    -b, --bound N          Bound GLs to this limit.
    -x, --exclude-broken   If GLs are > 0, remove site.


Type: transformation

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfglbound.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.