% VCFSAMPLEDIFF(1) vcfsamplediff (vcflib) | vcfsamplediff (VCF transformation) % Erik Garrison and vcflib contributors
vcfsamplediff
vcfsamplediff [options] [ ... ]
Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples.
options:
-s --strict Require that no observations in the germline support the somatic alternate.
Type: transformation
0 : Success
not 0 : Failure
vcflib(1)
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.