vcfsitesummarize.md

% VCFSITESUMMARIZE(1) vcfsitesummarize (vcflib) | vcfsitesummarize (VCF statistics) % Erik Garrison and vcflib contributors

NAME

vcfsitesummarize

SYNOPSIS

vcfsitesummarize

DESCRIPTION

Summarize by site

EXAMPLES

Example:

**vcfsitesummarize** samples/sample.vcf

CHROM   POS     ID      REF     QUAL    FILTER  AA      AC      AF      AN      DP      NS      DB      H2
19      111     .       A       9.6     .                                                       0       0
19      112     .       A       10      .                                                       0       0
20      14370   rs6054257       G       29      PASS                    0.5             14      3       1 1
20      17330   .       T       3       q10                     0.017           11      3       0       0
20      1110696 rs6040355       A       67      PASS    T                               10      2       1 0
20      1230237 .       T       47      PASS    T                               13      3       0       0
20      1234567 microsat1       G       50      PASS    G                       6       9       3       0 0
20      1235237 .       T       0       .                                                       0       0
X       10      rsTest  AC      10      PASS


Type: statistics

      

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfsitesummarize.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.