vcfstreamsort.md

% VCFSTREAMSORT(1) vcfstreamsort (vcflib) | vcfstreamsort (VCF transformation) % Erik Garrison and vcflib contributors

NAME

vcfstreamsort

SYNOPSIS

vcfstreamsort [options] [vcf file]

DESCRIPTION

Sorts the input (either stdin or file) using a streaming sort algorithm. Guarantees that the positional order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

OPTIONS

options:

    -h, --help             this dialog
    -w, --window N         number of sites to sort (default 10000)
    -a, --all              load all sites and then sort in memory

Type: transformation

EXIT VALUES

0 : Success

not 0 : Failure

SEE ALSO

vcflib(1)

OTHER

Source code

vcfstreamsort.cpp

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.