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What is the proper cutoff of GQ in the output vcf file ? #4473

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dudududu12138 opened this issue Dec 9, 2024 · 0 comments
Open

What is the proper cutoff of GQ in the output vcf file ? #4473

dudududu12138 opened this issue Dec 9, 2024 · 0 comments

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@dudududu12138
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Hi,I ran vg call and got a result vcf file. I filter the result firstly by the FILTER column which was PASS. And do I need to filter by the GQ field in INFO column? If so, what is a proper cutoff?
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