spage2vec_heart/spage2vec-pytorch-geometric at master · wahlby-lab/spage2vec_heart · GitHub

Name		Name	Last commit message	Last commit date
parent directory ..
README.md		README.md
cluster.py		cluster.py
environment.yml		environment.yml
paga-umap.py		paga-umap.py
plot-umap.py		plot-umap.py
preprocess.py		preprocess.py
pyg-gcn-dgi.py		pyg-gcn-dgi.py
pyg-gcn-rw.py		pyg-gcn-rw.py
pyg-sage-dgi.py		pyg-sage-dgi.py
pyg-sage-rw.py		pyg-sage-rw.py

README.md

Install conda, then

conda env create -f environment.yml

preprocess.py: construct graph
pyg-sage-rw.py: train graph neural network
cluster.py: perform UMAP and clustering
paga-umap.py: make plots
hm.ipynb: process the clusters and make plots