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Viewers.html
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<!DOCTYPE html>
<html>
<head>
<style>
* {
box-sizing: border-box;
}
body {
margin: 0;
}
.header {
background-color: #2196F3;
color: white;
text-align: center;
padding: 0.5em;
}
* {
box-sizing: border-box;
}
.box {
float: left;
width: 49%; /* two boxes (use 33.33% for four, and 50% for two, etc) */
/*
padding-bottom:90%;
*/
padding: 10px; /* if you want space between the images */
}
.footer {
background-color: #444;
color: white;
padding: 15px;
}
.topmenu {
list-style-type: none;
margin: 0;
padding: 0;
overflow: hidden;
background-color: #777;
}
.topmenu li {
float: left;
}
.topmenu li a {
display: inline-block;
color: white;
text-align: center;
padding: 16px;
text-decoration: none;
}
.topmenu li a:hover {
background-color: #222;
}
.topmenu li a.active {
color: white;
background-color: #4CAF50;
}
#jolecule-embed {
width: 100%;
height: 500px;
margin: 2px 0 0 0;
}
.viewer_3Dmoljs {
width: 100%;
height: 500px;
margin: 2px 0 0 0;
}
.viewer_embed {
width: 100%;
height: 500px;
margin: 2px 0 0 0;
}
</style>
<script
type="text/javascript"
src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.js">
</script>
<!--
This didn't work: Molmil interferes with other viewers if it is embedded in this way.
<script>
var molmil_settings = {src: "http://gjbekker.github.io/molmil/"}, canvas;
function initViewer() {
// wait until Molmil has been properly loaded
if (! window.molmil.configBox || ! molmil.configBox.initFinished) {return setTimeout(initViewer, 100);}
canvas = document.getElementById("molmilViewer");
canvas = molmil.createViewer(canvas); // initialize the canvas
molmil.loadPDB(canvas.getAttribute("data-pdbid"), null, null, canvas.molmilViewer); // load the entry
}
</script>
-->
<script src="http://3Dmol.csb.pitt.edu/build/3Dmol.js"></script>
</head>
<body">
<ul class="topmenu">
<li><a href="#jolecule">Jolecule</a></li>
<li><a href="#jsmol">JSmol</a></li>
<li><a href="#molmil">MolMil</a></li>
<li><a href="#molstar">MolStar</a></li>
<li><a href="#nglviewer">NGL Viewer</a></li>
<li><a href="#pdbribbons">PDBribbons</a></li>
<li><a href="#3dmol">3Dmol.js</a></li>
<li><a href="#icn3d">iCN3D</a></li>
<li><a href="#litemol">LiteMol</a></li>
<li><a href="#miew">Miew</a></li>
</ul>
<div class="box">
<div class="header">
<a name="jolecule">
<h1>Jolecule</h1>
</a>
</div>
<!-- the div id is used to determine where the viewer goes in the page
(see divTag variable) -->
<div id="jolecule-embed"></div>
<script>
require(['https://jolecule.com/js/jolecule.js'], function(jolecule) {
var widget = jolecule.initEmbedJolecule({
divTag: '#jolecule-embed', // jquery Tag to your div element
animateState: 'loop', // 'none', 'loop', 'rotate', 'rock'
isSequenceBar: true, // shows sequence bar in the header
isGrid: true, // show docking grid panel
isEditable: true, // show editable buttons at the footer
isPlayable: true, // show playable option buttons at the footer
backgroundColor: 0x000000, // background of 3D context
maxWaitStep: 150, // time to wait per view in looping mode
isTextOverlay: true, // Show description text
isToolbarOnTop: false,
isToolbarOn: true,
})
widget.asyncAddDataServer(
jolecule.makePdbDataServer({
pdbId: "1o5w", // pdbId for RCSB website
// userId: "117908387177518174476", // user_id to select views for a given author
isDisableSaveViews: false, // prevent saving views
saveViewsUrl: 'http://jolecule.com', // url to fetch views
isLoadViews: true, // attempts to load views
biounit: 0 //, // loads biounit from pdb 0, 1, 2, 3...
// viewId: 'view:e9mx4p' // initial view
})
)
})
</script>
</div>
<div class="box">
<div class="header">
<a name="jsmol">
<h1>JSmol</h1>
</a>
</div>
</div>
<div class="box">
<div class="header">
<a name="molmil">
<h1>MolMil</h1>
</a>
</div>
<div>
<!--
This didn't work: Molmil interferes with other viewers if it is embedded in this way.
It has to go into its own iframe.
<span class="molmil_UI_container">
<canvas id="molmilViewer" data-pdbid="1o5w" width="100%" height="100%" style="display: block; border: 1px solid #DDD;"></canvas>
</span>
-->
<iframe onload="initViewer();" class="viewer_embed" src="http://gjbekker.github.io/molmil/#molmil.loadPDB('1o5w'); molmil.cli_soup.animation.motionMode = 3; molmil.cli_soup.animation.play();"></iframe>
</div>
See more <a href="https://github.com/gjbekker/molmil/wiki/Molmil-integration-examples">integration examples</a>.
</div>
<div class="box">
<a name="molstar">
<div class="header">
<h1>MolStar</h1>
</div>
</a>
</div>
<div class="box">
<a name="nglviewer">
<div class="header">
<h1>NGL Viewer</h1>
</div>
</a>
</div>
<div class="box">
<a name="pdbribbons">
<div class="header">
<h1>PDBribbons</h1>
</div>
</a>
</div>
<div class="box">
<a name="3dmol">
<div class="header">
<h1>3Dmol.js</h1>
</div>
</a>
<!-- Important: The div class name needs to be 'viewer_3Dmoljs' for this to work. -->
<div class='viewer_3Dmoljs' data-pdb='1o5w' data-style='cartoon' data-select1='chain:A' data-style1='cartoon:color=spectrum' data-surface1='opacity:.7;color:white' ></div>
See <a href="https://3dmol.csb.pitt.edu/doc/tutorial-embeddable.html">embedding tutorial</a>.
</div>
<div class="box">
<a name="icn3d">
<div class="header">
<h1>iCN3D</h1>
</div>
</a>
</div>
<div class="box">
<a name="litemol">
<div class="header">
<h1>LiteMol</h1>
</div>
</a>
</div>
<div class="box">
<a name="miew">
<div class="header">
<h1>Miew</h1>
</div>
</a>
</div>
<script src="http://gjbekker.github.io/molmil/molmil.js"></script>
</body>
</html>