DESCRIPTION

Package: CAISC
Title: Clonal Architecture with Integration of SNV and CNV
Version: 1.0.0
Authors@R:c(
       person(given = "Liza", family = "Mathews", role = c("aut", "cre"), email = "lizamathews5@gmail.com", comment = c(ORCID = "0000-0002-9977-7631")),
       person(given = "Jeerthi", family = "Kannan", role = "aut", email = "jeerthi98@gmail.com"),
       person(given = "Shouguo", family = "Gao", role = "aut", email = "shouguo.gao@nih.gov"))
Description: This package implements a new subclone detection algorithm that integrates SNV and CNV data in order to obtain more robsust clustering results.
Depends: R (>= 4.1.0)
biocViews: 
License: `use_mit_license()`, `use_gpl3_license()` or friends to
    pick a license
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports:
    data.table,
    dplyr,
    dendextend,
    TailRank,
    phyclust,
    colorspace,
    infercnv (== 1.6.0),
    InteractiveComplexHeatmap,
    leiden,
    leidenAlg,
    gtools,
    igraph
Remotes: 
    broadinstitute/inferCNV