trim spaces in text labels of data nodes

[egonw]

In the current GPML created some labels have redundant spaces at the end of labels, e.g. in WP3579:

<DataNode TextLabel="PC " GraphId="cdb40" Type="Metabolite" GroupRef="bbf32">
  <Attribute Key="cellular_location" Value="endoplasmic reticulum membrane" />
  <Attribute Key="complex_id" Value="R-ALL-5684863" />
  <Attribute Key="copies_num" Value="1" />
  <Graphics CenterX="240.0" CenterY="1851.0" Width="100.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" />
  <Xref Database="ChEBI" ID="CHEBI:16110" />
</DataNode>

[DeniseSl22]

I'll check if this is still occurring in newer versions; but this could be due to curators in Reactome accidentally adding a space. And I'll try to get the trim() integrated in the pathways.

[egonw]

Yes, still the case in the current output:

  <DataNode TextLabel="Dovitinib " GraphId="ba4b1" GroupRef="d4f5d">
    <Attribute Key="cellular_location" Value="cytosol" />
    <Attribute Key="complex_id" Value="R-ALL-2045079" />
    <Attribute Key="copies_num" Value="1" />
    <Graphics CenterX="0.0" CenterY="0.0" Width="0.0" Height="0.0" ZOrder="32768" FontSize="10" Valign="Middle" />
    <Xref Database="" ID="" />
  </DataNode>

[DeniseSl22]

Okay, I'll add this to the converter code asap, but will be fixed then in version 67 (or is it a necessary fix for older versions?)...

[egonw]

No, for version 67 sounds fine. Is that the latest version in this round, or the next? You could always opt to redo the last one you have now...

[DeniseSl22]

Okay, good. 67 would be the next version, but I can do the testing on version 66. But I want consistency for the previous version uploads, since it is otherwise to difficult for me to pinpoint where things are breaking down 9if they do).