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setup.py
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setup.py
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from glob import glob
from io import open
from os.path import splitext, basename
from setuptools import setup, find_packages, Extension
try:
from Cython.Build import cythonize
except ImportError:
USE_CYTHON = False
else:
USE_CYTHON = True
ext = '.pyx' if USE_CYTHON else '.cpp'
extensions = [Extension(
"cortexpy.graph.parser.kmer_ext",
["src/cortexpy/graph/parser/kmer_ext" + ext],
extra_compile_args=["-std=c++11"],
extra_link_args=["-std=c++11"]
)]
if USE_CYTHON:
extensions = cythonize(extensions) # , annotate=True)
version = '0.46.5'
setup(
name='cortexpy',
version=version,
description='The python sister project to CortexJDK',
author='Warren W. Kretzschmar, Kiran V Garimella',
author_email='[email protected], [email protected]',
url='https://github.com/winni2k/cortexpy',
download_url='https://github.com/winni2k/cortexpy/archive/{}.tar.gz'.format(version),
license='Apache-2.0',
long_description=open('README.rst').read(),
install_requires="""
attrs>=19.2
biopython
numpy
networkx==2.3
schema
delegation
msgpack
pyyaml>=4.2b1
""".split('\n'),
tests_require=['coverage', 'pytest'],
python_requires=">=3.6",
packages=find_packages('src'),
package_dir={'': 'src'},
py_modules=[splitext(basename(path))[0] for path in glob('src/*.py')],
ext_modules=extensions,
classifiers=[
'Development Status :: 3 - Alpha',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Apache Software License',
'Natural Language :: English',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: Implementation :: CPython',
],
entry_points={
'console_scripts': ['cortexpy=cortexpy.__main__:main'],
},
include_package_data=True
)