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_struct_ref_seq category has .pdbx_strand_id but no .asym_id #56

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drlemmus opened this issue Aug 14, 2023 · 0 comments
Open

_struct_ref_seq category has .pdbx_strand_id but no .asym_id #56

drlemmus opened this issue Aug 14, 2023 · 0 comments

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@drlemmus
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The pdbx items of _struct_ref_seq use .pdbx_strand_id to reference specific macromolecular chains that are alignedto a reference sequence, but there is no .asym_id equivalent. This forces us to use 'PDB numbering' which seems to be a step back from the mmCIF idea.

  1. Can the item _struct_ref_seq.asym_id be added?
  2. Should the item _struct_ref_seq.pdbx_strand_id perhaps be deprecated?
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