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curio-seeker-example-config.config
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curio-seeker-example-config.config
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params {
fastq_chunk_size = 3000000
bam_chunk_size = 3000000
}
profiles {
low_resources {
params {
fastq_chunk_size = 3000000
bam_chunk_size = 3000000
}
process {
withName: 'CURIOSEEKER_READ1_DB' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_READ2_DB' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_TAGBAM' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_FILTERREADS' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_GENBARCODES' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_GENBARCODEFASTA' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_CALCULATETOPBB' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_BARCODEMATCHING' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_UMITOOLSCOUNTSX' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_GENGENESDF' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'CURIOSEEKER_GENREAD2DB' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
withName: 'STAR_ALIGN' {
memory = 36
cpus = 8
//queue = 'dev'
//clusterOptions = '--constraint m5a2xlarge'
}
}
}
medium_resources {
params {
fastq_chunk_size = 5000000
bam_chunk_size = 5000000
}
process {
withName: 'CURIOSEEKER_READ1_DB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_READ2_DB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_TAGBAM' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENBARCODES' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENBARCODEFASTA' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_CALCULATETOPBB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_BARCODEMATCHING' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_UMITOOLSCOUNTSX' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENGENESDF' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'STAR_ALIGN' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
}
}
}
high_resources {
process {
withName: 'CURIOSEEKER_READ1_DB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_READ2_DB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_TAGBAM' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENBARCODES' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENBARCODEFASTA' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_CALCULATETOPBB' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_BARCODEMATCHING' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_UMITOOLSCOUNTSX' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'CURIOSEEKER_GENGENESDF' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
withName: 'STAR_ALIGN' {
memory = 256
cpus = 32
//queue = 'memory-low'
//clusterOptions = '--constraint r6i8xlarge'
}
}
}
}