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Bash Linting with Auto-Fix Suggestions #1

Bash Linting with Auto-Fix Suggestions

Bash Linting with Auto-Fix Suggestions #1

Manually triggered March 6, 2026 04:48
Status Success
Total duration 21s
Artifacts

bash-lint-advanced.yml

on: workflow_dispatch
ShellCheck Analysis & Suggestions
12s
ShellCheck Analysis & Suggestions
Create Auto-Fix PR
0s
Create Auto-Fix PR
Linting Summary
2s
Linting Summary
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10 notices
ShellCheck Analysis & Suggestions: ./05_visualise_data.sh#L22
[1091] Not following: ./install/bin/GMXRC was not specified as input (see shellcheck -x). - See: https://www.shellcheck.net/wiki/1091
ShellCheck Analysis & Suggestions: ./05_visualise_data.sh#L10
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
ShellCheck Analysis & Suggestions: ./06_generate_variants.sh#L56
[2012] Use find instead of ls to better handle non-alphanumeric filenames. - See: https://www.shellcheck.net/wiki/2012
ShellCheck Analysis & Suggestions: ./06_generate_variants.sh#L37
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
ShellCheck Analysis & Suggestions: ./06_generate_variants.sh#L35
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
ShellCheck Analysis & Suggestions: ./02_install_gromacs.sh#L38
[2046] Quote this to prevent word splitting. - See: https://www.shellcheck.net/wiki/2046
ShellCheck Analysis & Suggestions: ./02_install_gromacs.sh#L29
[2086] Double quote to prevent globbing and word splitting. - See: https://www.shellcheck.net/wiki/2086
ShellCheck Analysis & Suggestions: ./02_install_gromacs.sh#L6
[2034] REPO_URL appears unused. Verify use (or export if used externally). - See: https://www.shellcheck.net/wiki/2034
ShellCheck Analysis & Suggestions: ./03_maintenance.sh#L35
[1090] ShellCheck can't follow non-constant source. Use a directive to specify location. - See: https://www.shellcheck.net/wiki/1090
ShellCheck Analysis & Suggestions: ./04_test_folding_pipeline.sh#L22
[1090] ShellCheck can't follow non-constant source. Use a directive to specify location. - See: https://www.shellcheck.net/wiki/1090