Bash Linting with Auto-Fix Suggestions #1
bash-lint-advanced.yml
on: workflow_dispatch
ShellCheck Analysis & Suggestions
12s
Create Auto-Fix PR
0s
Linting Summary
2s
Annotations
10 notices
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ShellCheck Analysis & Suggestions:
./05_visualise_data.sh#L22
[1091] Not following: ./install/bin/GMXRC was not specified as input (see shellcheck -x). - See: https://www.shellcheck.net/wiki/1091
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ShellCheck Analysis & Suggestions:
./05_visualise_data.sh#L10
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
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ShellCheck Analysis & Suggestions:
./06_generate_variants.sh#L56
[2012] Use find instead of ls to better handle non-alphanumeric filenames. - See: https://www.shellcheck.net/wiki/2012
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ShellCheck Analysis & Suggestions:
./06_generate_variants.sh#L37
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
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ShellCheck Analysis & Suggestions:
./06_generate_variants.sh#L35
[2162] read without -r will mangle backslashes. - See: https://www.shellcheck.net/wiki/2162
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ShellCheck Analysis & Suggestions:
./02_install_gromacs.sh#L38
[2046] Quote this to prevent word splitting. - See: https://www.shellcheck.net/wiki/2046
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ShellCheck Analysis & Suggestions:
./02_install_gromacs.sh#L29
[2086] Double quote to prevent globbing and word splitting. - See: https://www.shellcheck.net/wiki/2086
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ShellCheck Analysis & Suggestions:
./02_install_gromacs.sh#L6
[2034] REPO_URL appears unused. Verify use (or export if used externally). - See: https://www.shellcheck.net/wiki/2034
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ShellCheck Analysis & Suggestions:
./03_maintenance.sh#L35
[1090] ShellCheck can't follow non-constant source. Use a directive to specify location. - See: https://www.shellcheck.net/wiki/1090
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ShellCheck Analysis & Suggestions:
./04_test_folding_pipeline.sh#L22
[1090] ShellCheck can't follow non-constant source. Use a directive to specify location. - See: https://www.shellcheck.net/wiki/1090
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