_pkgdown.yml

url: http://github.com/xinghuq/KLFDAPC

development:
  mode: auto

template:
  params:
    ganalytics: UA-158177382-1

authors:
  Xinghu Qin:
  href: https://sites.google.com/view/communitygenomics/home



navbar:
  left:
    - text: "Home"
      href: index.html
    - text: "Articles"
      href: articles/index.html
    - text: "Manual"
      href: reference/index.html

home:
  - title: Kernel Local Fisher Discriminant Analysis of Principal Component Analysis (KLFDAPC) for inference of individual geograhphic origin and detection of natural selection
    contents:
    - index
  - title: Kernel Local Fisher Discriminant Analysis of Principal Component Analysis (KLFDAPC)
    links:
    - text: Ask a question about KLFDAPC
      href: https://community.rstudio.com/

articles:
- title: "Population structure of SARS-Cov-2"
  contents:
  - Population_structure_of_Covid

- title: "Population structure of Regmap data"
  contents:
  - Population_structure_of_RegMap

- title: "Detecting signatures of selection using KLFDAPC"
  contents:
  - Genome_scan_KLFDAPC


reference:
  - title: KLFDAPC general function
    desc: Kernel Local Fisher Discriminant Analysis of Principal Component Analysis functions
  - contents:
    - starts_with("KLFDA")
    - starts_with("KLFDAPC")
    - starts_with("predict.klfdapc")

  - title: Kernel methods
  - contents:
    - starts_with("kmatrixGauss")
    - starts_with("KLFDAPC")
  - title: Genome scan based on KLFDAPC
  - contents:
    - starts_with("KLFDAPT")
  - title: Data
  - contents:
    - starts_with("regmappcs")