Degust can be installed natively or using Docker.
As the install user:
git clone https://github.com/rbenv/rbenv.git ~/.rbenv
Add to .bashrc
export PATH="$HOME/.rbenv/bin:$PATH"
eval "$(rbenv init -)"
export PATH="$HOME/.rbenv/plugins/ruby-build/bin:$PATH"
Install ruby-build
git clone https://github.com/rbenv/ruby-build.git ~/.rbenv/plugins/ruby-build
Install ruby 2.4.0
rbenv install 2.4.0
And run it
rbenv global 2.4.0
Install bundler
gem install bundler
Install R
https://www.r-project.org/
Install R package dependencies
Rscript -e "install.packages(c('seriation', 'jsonlite'), repos='http://cran.rstudio.org')"
Rscript -e "source('http://bioconductor.org/biocLite.R'); biocLite('limma'); biocLite('edgeR')"
Ensure rails 4.2 is installed. Install the necessary gems:
bundle install
Build the js frontend
rake degust:deps
rake degust:build
Make various temporary directories
mkdir -p uploads log tmp/pids tmp/cache tmp/sockets tmp/R-cache
For production build (minifies js, and no source-maps)
rake degust:build RAILS_ENV=production
For development:
(cd degust-frontend ; ./node_modules/.bin/webpack build)
(cd degust-frontend ; ./node_modules/.bin/webpack --watch)
rails s
For production deploy. Configure config/deploy/production.rb
cap production deploy
Ensure Docker is installed, clone this repository, and then from inside the cloned repository, run:
docker build . --tag degust
Once the build process has completed, you will have a docker image tagged as "degust" on your system. To run this container, run:
docker run -p 8001:3000 --volume /tmp/degust:/opt/degust/uploads degust
This will start Degust in the Docker container, and allow access to the container via port 8001 on your machine.
The container directory /opt/degust/uploads is mapped to /tmp/degust on the host.
To access the website, go to http://localhost:8001/ on your web browser.
You can change 8001 to any port you wish to have Degust listening on
(eg, -p 80:3000 for a public production service).