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rheos_thesis.tex
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\documentclass[12pt, a4paper, twoside]{book}
\usepackage{graphicx}
\usepackage{grffile}
\usepackage[a4paper,width=150mm, top=25mm, bottom=25mm, bindingoffset=6mm]{geometry}
\usepackage[english]{babel}
\usepackage{fontspec}
\usepackage{multicol}
\usepackage{multirow}
\usepackage{booktabs}
\usepackage{minted}
\usepackage{caption}
\usepackage[backend=biber,style=numeric,hyperref=true, sorting=none]{biblatex}
\usepackage[hidelinks]{hyperref}
\addbibresource{rheos_references.bib}
\setlength{\parindent}{1em}
\setlength{\parskip}{1em}
\graphicspath{ {images/} }
\usepackage{fancyhdr}
\usepackage{enumitem}
\usepackage{csquotes}
\pagestyle{fancy}
\fancyhead{}
\fancyhead[LE]{\ifnum\value{chapter}>0 \leftmark \fi}
\fancyhead[RO]{\ifnum\value{chapter}>0 \rightmark \fi}
\fancyfoot{}
\fancyfoot[LE,RO]{\thepage}
%\fancyfoot[LO,CE]{\ifnum\value{chapter}>0 Chapter \thechapter\fi}
%\fancyfoot[CO,RE]{Sergei Yakneen}
\usepackage{color}
\usepackage{tabu}
\usepackage{longtable}
\usepackage{makecell}
\usepackage{tabularx}
\usepackage{float}
\usepackage{amsmath}
\newcommand\numberthis{\addtocounter{equation}{1}\tag{\theequation}}
\usepackage{amssymb}
\usepackage{amsthm}
\usepackage{algorithm,algorithmicx,algpseudocode}
\usepackage[ruled,vlined,algo2e]{algorithm2e}
\emergencystretch=2em
\usepackage{siunitx}
\DeclareMathOperator*{\argmax}{argmax}
\usepackage[toc]{appendix}
\renewcommand{\appendixname}{Appendix}
\renewcommand{\appendixtocname}{Appendix}
\usepackage{adjustbox}
\usepackage{pbox}
\usepackage{ragged2e}
\raggedbottom
\title{
{Modern Systems for Large-scale Genomics Data Analysis in the Cloud}\\
}
\author{Sergei Yakneen (Hon BSc)\\ Born in Krasnoyarsk, Russia\\}
\date{09/04/2019}
\begin{document}
\frontmatter
\renewcommand{\headrulewidth}{0pt}
\input{chapters/title}
\input{chapters/other_title}
\input{chapters/abstract}
\input{chapters/abstract_de}
\input{chapters/acknowledgements}
%\maketitle
\tableofcontents
\mainmatter
\renewcommand{\headrulewidth}{0.5pt}
\chapter{Introduction} \label{ch:introduction}
\input{chapters/introduction}
\chapter{Background and Related Work} \label{ch:background}
\input{chapters/background}
\chapter[Butler - Requirements and Architecture]{The Butler Framework - Requirements and Architecture} \label{ch:butler_architecture}
\input{chapters/butler_architecture}
\chapter[Butler - Implementation and Validation]{The Butler Framework - Implementation and Validation} \label{ch:butler_implementation}
\input{chapters/butler_implementation}
\chapter{The Rheos Framework} \label{ch:rheos_framework}
\input{chapters/rheos_framework}
\chapter{Discussion and Conclusion} \label{ch:conclusion}
\input{chapters/conclusion}
\backmatter
\label{ch:appendices}
\input{chapters/appendices}
\printbibliography
\end{document}