run_testing.py

###################################################
#
#   Script to execute the prediction
#
##################################################

import os
import ConfigParser


#config file to read from
config = ConfigParser.RawConfigParser()
config.readfp(open(r'./configuration.txt'))
#===========================================
#name of the experiment!!
name_experiment = config.get('experiment name', 'name')
nohup = config.getboolean('testing settings', 'nohup')   #std output on log file?

run_GPU = ' THEANO_FLAGS=device=gpu,floatX=float32 '

#create a folder for the results if not existing already
result_dir = name_experiment
print "\n1. Create directory for the results (if not already existing)"
os.system(' mkdir -p ' +result_dir)


# finally run the prediction
if nohup:
    print "\n2. Run the prediction on GPU  with nohup"
    os.system(run_GPU +' nohup python -u ./src/retinaNN_predict.py > ' +'./'+name_experiment+'/'+name_experiment+'_prediction.nohup')
else:
    print "\n2. Run the prediction on GPU (no nohup)"
    os.system(run_GPU +' python ./src/retinaNN_predict.py')