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Using the Spycone tutorial and my own data, I noticed that there is one missing time point when plotting the clusters for the total isoform usage. Is this expected?
For instance, If you see the tutorial cluster figure https://spycone.readthedocs.io/en/latest/alternative.html you have in total 4 time points in the test set, but when plotting the clusters there are only 3. Any idea how to solve this?
Also, the parameters to change axis labels and x-axis tick labels are not working, so it is completely impossible to see which timepoint is missing.
Thanks and all the best,
Nicolas
The text was updated successfully, but these errors were encountered:
I found an answer to my first question in case someone needs it.
Taken from the author's paper: Each cluster is represented by a cluster prototype, which is the median change of total isoform usage per pair of time points.
So if you have 4 time points, the DTU cluster plot would be tp0-tp1, tp1-tp2, tp2-tp3, meaning that there are only 3 ticks in the x-axis.
Hi there,
Using the Spycone tutorial and my own data, I noticed that there is one missing time point when plotting the clusters for the total isoform usage. Is this expected?
For instance, If you see the tutorial cluster figure https://spycone.readthedocs.io/en/latest/alternative.html you have in total 4 time points in the test set, but when plotting the clusters there are only 3. Any idea how to solve this?
Also, the parameters to change axis labels and x-axis tick labels are not working, so it is completely impossible to see which timepoint is missing.
![Screenshot 2024-05-22 at 10 24 20](https://private-user-images.githubusercontent.com/19077113/332719600-5a20cdd4-06be-4481-8403-07acbc8d5708.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.W6vEIUzCKvk1fRWIxtALbKJV_u-iPxukymhqUkhE1dA)
Thanks and all the best,
Nicolas
The text was updated successfully, but these errors were encountered: