{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":151877981,"defaultBranch":"master","name":"noodles","ownerLogin":"zaeleus","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-10-06T20:14:49.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/191331?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1724168995.0","currentOid":""},"activityList":{"items":[{"before":"9c5a010ced683a35f5d2ac730de450b9402949bb","after":"9f3ff00cf1d872d664465d4a4a2b90dc9536122b","ref":"refs/heads/master","pushedAt":"2024-09-10T16:58:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/variant/record/info/field/value/array/values/tests: Add number tests","shortMessageHtmlLink":"vcf/variant/record/info/field/value/array/values/tests: Add number tests"}},{"before":"c940edd630f0b20a66c4f15ae7d1e335be4740f0","after":"9c5a010ced683a35f5d2ac730de450b9402949bb","ref":"refs/heads/master","pushedAt":"2024-09-09T16:32:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"Bump versions for noodles 0.81.0","shortMessageHtmlLink":"Bump versions for noodles 0.81.0"}},{"before":"6a91b5aba1bd2b566c7c57a75c2c0da4da984e2b","after":"c940edd630f0b20a66c4f15ae7d1e335be4740f0","ref":"refs/heads/master","pushedAt":"2024-09-08T16:57:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/variant/record/info/field/value/array/values/tests: Add test for missing string value","shortMessageHtmlLink":"vcf/variant/record/info/field/value/array/values/tests: Add test for …"}},{"before":"7cc3b0dd511dc6623d665bc771a28d67c82be115","after":"6a91b5aba1bd2b566c7c57a75c2c0da4da984e2b","ref":"refs/heads/master","pushedAt":"2024-09-06T18:02:38.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/record/info/field/value: Percent-decode string value\n\nThis changes string values from `&str` to `Cow<'_, str>`.\n\nFixes #300.","shortMessageHtmlLink":"vcf/record/info/field/value: Percent-decode string value"}},{"before":"5d67b645b8331ba825d907e61102370018902d08","after":"7cc3b0dd511dc6623d665bc771a28d67c82be115","ref":"refs/heads/master","pushedAt":"2024-09-05T16:56:27.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/record/samples/series/value/genotype: Fix clippy::manual_pattern_char_comparison warning\n\nThis was added in Rust 1.81.0 / clippy 0.1.81 (eeb90cd 2024-09-04).","shortMessageHtmlLink":"vcf/record/samples/series/value/genotype: Fix clippy::manual_pattern_…"}},{"before":"e9ee6e908c5edd4c9b139f98242f98097f8398b9","after":"5d67b645b8331ba825d907e61102370018902d08","ref":"refs/heads/master","pushedAt":"2024-09-04T18:10:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"Bump versions for noodles 0.80.0","shortMessageHtmlLink":"Bump versions for noodles 0.80.0"}},{"before":"a9548980f3e2bd6a9b70dcad7254982936df4284","after":"e9ee6e908c5edd4c9b139f98242f98097f8398b9","ref":"refs/heads/master","pushedAt":"2024-09-04T16:45:09.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"gtf/record/attributes: Read string values as text between double quotes\n\nThis allows the entry delimiter (`;`) to be used in string values.\n\nFixes #299.","shortMessageHtmlLink":"gtf/record/attributes: Read string values as text between double quotes"}},{"before":"5545bc30ec66faacb149e3e8b9fceba6b7d699aa","after":"a9548980f3e2bd6a9b70dcad7254982936df4284","ref":"refs/heads/master","pushedAt":"2024-08-29T23:45:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"util/alignment/async/io/writer: Shut down SAM writer","shortMessageHtmlLink":"util/alignment/async/io/writer: Shut down SAM writer"}},{"before":"16f9a13b76376d68008bd406c751dcdfe8055c64","after":"5545bc30ec66faacb149e3e8b9fceba6b7d699aa","ref":"refs/heads/master","pushedAt":"2024-08-28T22:49:44.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bcf/async/io/reader: Fix typo","shortMessageHtmlLink":"bcf/async/io/reader: Fix typo"}},{"before":"802ed0350c1a5e3fba9c38c46256f08e021b0ff1","after":"16f9a13b76376d68008bd406c751dcdfe8055c64","ref":"refs/heads/master","pushedAt":"2024-08-26T15:54:35.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"util/alignment: Add async writer (#292)\n\n* util/alignment/async: add async alignment writer\r\n\r\n* util/alignment/async: fmt\r\n\r\n* util/alignment/async: explicitly convert to cram::Record\r\n\r\n* util/alignment/async: add Writer::finish\r\n\r\n* util/alignment/async: add Writer example\r\n\r\n* util/alignment/async: add missing async declaration\r\n\r\n* util/alignment/async: change finish to shutdown\r\n\r\n* util/alignment/async: tidy up imports","shortMessageHtmlLink":"util/alignment: Add async writer (#292)"}},{"before":"c0c7ff06659cff6ea973bf243e522cd931eab994","after":"802ed0350c1a5e3fba9c38c46256f08e021b0ff1","ref":"refs/heads/master","pushedAt":"2024-08-25T16:53:46.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bgzf/async: Use NonZeroUsize::MIN","shortMessageHtmlLink":"bgzf/async: Use NonZeroUsize::MIN"}},{"before":"174ad3c98092728a6be3feabb346619ebd14a5ad","after":"c0c7ff06659cff6ea973bf243e522cd931eab994","ref":"refs/heads/master","pushedAt":"2024-08-23T16:19:35.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"util/variant/async/io/reader: Remove unused import from example","shortMessageHtmlLink":"util/variant/async/io/reader: Remove unused import from example"}},{"before":"3ee28b85a92d77c43978b70eed076d16f8888c2a","after":"174ad3c98092728a6be3feabb346619ebd14a5ad","ref":"refs/heads/master","pushedAt":"2024-08-21T18:38:14.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"util: Remove intra-doc links\n\nThese modules are not always enabled.","shortMessageHtmlLink":"util: Remove intra-doc links"}},{"before":"fdd6e3546cc9a85be61fd9f6d22f05cef16abc54","after":null,"ref":"refs/heads/bed-feature","pushedAt":"2024-08-20T15:49:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"}},{"before":"8d1ca90fbc860247426f6cd399f55093557138ae","after":"3ee28b85a92d77c43978b70eed076d16f8888c2a","ref":"refs/heads/master","pushedAt":"2024-08-20T15:49:38.000Z","pushType":"push","commitsCount":118,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"Use lexical-core as a workspace dependency\n\nBoth noodles-bed and noodles-sam use this as a dependency.","shortMessageHtmlLink":"Use lexical-core as a workspace dependency"}},{"before":"bba0ee59d0fc62e7f04ac5ef6da9f3c66b19bbcd","after":"8d1ca90fbc860247426f6cd399f55093557138ae","ref":"refs/heads/master","pushedAt":"2024-08-16T18:57:27.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bcf/record/codec/decoder/position: Fix reading position at max position\n\nThis would previously overflow and error instead of returning a properly\nnormalized `Position`.","shortMessageHtmlLink":"bcf/record/codec/decoder/position: Fix reading position at max position"}},{"before":"bb2938ff0fccd734c1bac255f7a2010e73991df3","after":"bba0ee59d0fc62e7f04ac5ef6da9f3c66b19bbcd","ref":"refs/heads/master","pushedAt":"2024-08-15T21:24:53.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"util/alignment: Add async reader (#288)\n\n* [WIP] add skeleton code for async reader\r\n\r\n* util/alignment/async: add Reader\r\n\r\n* util/alignment/async: add Reader Builder\r\n\r\n* util/alignment/async: fix Reader Builder\r\n\r\n* util/alignment/async: add doc examples\r\n\r\n* util/alignment/async: add async view example\r\n\r\n* util/alignment: Organize imports\r\n\r\n* util/alignment/async/io: Update descriptions\r\n\r\n* util/alignment/async/io/reader: Simplify examples\r\n\r\n* util/examples/alignment_view_async: Normalize example\r\n\r\nThis is to better match `util_variant_view_async`.\r\n\r\n* util: Add required features for util_alignment_view_async example\r\n\r\n* util: Sort async dependencies\r\n\r\n* util/alignment/async/io/reader/builder: Import Path\r\n\r\n* util/changelog: Add entry for async reader\r\n\r\n---------\r\n\r\nCo-authored-by: Michael Macias ","shortMessageHtmlLink":"util/alignment: Add async reader (#288)"}},{"before":"2cd3b7b72f5d3fdc7dac17f68262ac1e85926ea7","after":"bb2938ff0fccd734c1bac255f7a2010e73991df3","ref":"refs/heads/master","pushedAt":"2024-08-15T15:09:20.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bam/record/codec/decoder/cigar: Remove unused error","shortMessageHtmlLink":"bam/record/codec/decoder/cigar: Remove unused error"}},{"before":"a6918cfec9e34f0e85c96ad3d6726e171ec2a9a9","after":"2cd3b7b72f5d3fdc7dac17f68262ac1e85926ea7","ref":"refs/heads/master","pushedAt":"2024-08-13T16:13:09.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bcf/record/codec/decoder/chromosome_id: Add tests","shortMessageHtmlLink":"bcf/record/codec/decoder/chromosome_id: Add tests"}},{"before":"80db6e58c9085363e0cd9c02363598fe5526f444","after":"a6918cfec9e34f0e85c96ad3d6726e171ec2a9a9","ref":"refs/heads/master","pushedAt":"2024-08-09T18:19:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/variant/record: Infer length using both reference bases length and samples LEN values","shortMessageHtmlLink":"vcf/variant/record: Infer length using both reference bases length an…"}},{"before":"97d4b8a72c3872ed5174bda5d2308c9d4b348d86","after":"fdd6e3546cc9a85be61fd9f6d22f05cef16abc54","ref":"refs/heads/bed-feature","pushedAt":"2024-08-08T19:07:55.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/io/writer/record/tests: Add additional record writer tests","shortMessageHtmlLink":"bed/io/writer/record/tests: Add additional record writer tests"}},{"before":"e59d16c2a706786d3c8b0412133e77323ea40269","after":"80db6e58c9085363e0cd9c02363598fe5526f444","ref":"refs/heads/master","pushedAt":"2024-08-08T19:07:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"vcf/header/record/value/map/info/definition: Add VCF 4.5 info definitions","shortMessageHtmlLink":"vcf/header/record/value/map/info/definition: Add VCF 4.5 info definit…"}},{"before":"22bccf0b6ea9b164fb721ab9f1557fa69e7d8273","after":"97d4b8a72c3872ed5174bda5d2308c9d4b348d86","ref":"refs/heads/bed-feature","pushedAt":"2024-08-07T19:36:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/feature/record_buf: Add mutable getters","shortMessageHtmlLink":"bed/feature/record_buf: Add mutable getters"}},{"before":"41609f94809a9af079179acec179c2b0306f0083","after":"22bccf0b6ea9b164fb721ab9f1557fa69e7d8273","ref":"refs/heads/bed-feature","pushedAt":"2024-08-06T18:35:04.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/io/writer: Add builder","shortMessageHtmlLink":"bed/io/writer: Add builder"}},{"before":"e7dee1dd1d2bb5106287479dcc459df56cd7e17d","after":"e59d16c2a706786d3c8b0412133e77323ea40269","ref":"refs/heads/master","pushedAt":"2024-08-04T23:18:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"Bump versions for noodles 0.79.0","shortMessageHtmlLink":"Bump versions for noodles 0.79.0"}},{"before":"7e3b5179ebf374f5bac38266d94d9e279eeae443","after":"41609f94809a9af079179acec179c2b0306f0083","ref":"refs/heads/bed-feature","pushedAt":"2024-08-02T17:56:02.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/io/writer/record/other_fields/value: Add string writer","shortMessageHtmlLink":"bed/io/writer/record/other_fields/value: Add string writer"}},{"before":"08f0a3fc0d65b5b5f2005028a1de7db132787822","after":"e7dee1dd1d2bb5106287479dcc459df56cd7e17d","ref":"refs/heads/master","pushedAt":"2024-08-02T17:55:56.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"fastq: Update format description","shortMessageHtmlLink":"fastq: Update format description"}},{"before":"157c3eb894f99a85f8805b5b4c2e6a0ce15cb54b","after":"7e3b5179ebf374f5bac38266d94d9e279eeae443","ref":"refs/heads/bed-feature","pushedAt":"2024-08-01T19:07:11.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/feature/record_buf/other_fields/value: Add conversions from raw values","shortMessageHtmlLink":"bed/feature/record_buf/other_fields/value: Add conversions from raw v…"}},{"before":"c3f569749fef05ba06f98dcef708e5bb5d02a387","after":"08f0a3fc0d65b5b5f2005028a1de7db132787822","ref":"refs/heads/master","pushedAt":"2024-08-01T16:10:46.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"fastq/io/writer: Support setting a custom definition separator\n\nSee #287.","shortMessageHtmlLink":"fastq/io/writer: Support setting a custom definition separator"}},{"before":"1b39d5efb4f3507ef4c2677718837b2c2a2a7d9f","after":"157c3eb894f99a85f8805b5b4c2e6a0ce15cb54b","ref":"refs/heads/bed-feature","pushedAt":"2024-07-30T23:30:40.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"zaeleus","name":"Michael Macias","path":"/zaeleus","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/191331?s=80&v=4"},"commit":{"message":"bed/io/writer: Use sink in examples","shortMessageHtmlLink":"bed/io/writer: Use sink in examples"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEslHk9AA","startCursor":null,"endCursor":null}},"title":"Activity · zaeleus/noodles"}