Initial commit

.github/workflows/github-pages.yml

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+name: Quantile Forest Docs
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v2
+        with:
+          python-version: '3.10'
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r ./requirements.txt
+          pip install -r ./docs/sphinx_requirements.txt
+          python setup.py build_ext --inplace && pip install .
+
+      - name: Build documents
+        run: |
+          cd ./docs/
+          make clean
+          make html
+        env:
+          GA_TRACKING_ID: ${{ secrets.GA_TRACKING_ID }}
+
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_branch: gh-pages
+          publish_dir: ./docs/_build/html/

.github/workflows/python-app.yml

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+name: Quantile Forest CI
+
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.10'
+
+    - name: Cache dependencies
+      id: cache
+      uses: actions/cache@v2
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+          ${{ runner.os }}-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest
+        pip install -r requirements.txt
+        pip install -r ./docs/sphinx_requirements.txt
+        python setup.py build_ext --inplace && pip install .
+
+    - name: Linting with flake8
+      run: |
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics || exit 1
+        flake8 . --count --exit-zero --max-line-length=100 --statistics
+
+    - name: Test with pytest
+      run: |
+        python -m pytest

.github/workflows/python-publish.yml

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+name: Quantile Forest CD
+
+on:
+  push:
+    branches:
+      - main
+    tags:
+      - 'v*.*.*'
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-20.04, windows-2019, macOS-latest]
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: actions/setup-python@v2
+
+      - name: Install cibuildwheel
+        run: python -m pip install cibuildwheel==2.3.1
+
+      - name: Build wheels for Linux
+        if: matrix.os == 'ubuntu-20.04'
+        run: |
+          python -m cibuildwheel --output-dir wheelhouse
+        env:
+          CIBW_SKIP: "pp* *i686* *musllinux*"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.7"
+          CIBW_BEFORE_BUILD: pip install -r requirements.txt && python setup.py build_ext --inplace && pip install .
+
+      - name: Build wheels for Windows
+        if: matrix.os == 'windows-2019'
+        run: |
+          python -m cibuildwheel --output-dir wheelhouse
+        env:
+          CIBW_SKIP: "pp* cp310-* *i686*"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.7"
+          CIBW_BEFORE_BUILD: pip install -r requirements.txt && python setup.py build_ext --inplace && pip install .
+
+      - name: Build wheels for macOS
+        if: matrix.os == 'macos-latest'
+        run: |
+          python -m cibuildwheel --output-dir wheelhouse
+        env:
+          CIBW_SKIP: "pp* *i686*"
+          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.7"
+          CIBW_BEFORE_BUILD: pip install -r requirements.txt && python setup.py build_ext --inplace && pip install .
+
+      - uses: actions/upload-artifact@v2
+        with:
+          path: ./wheelhouse/*.whl
+
+  upload_pypi:
+    needs: build_wheels
+    runs-on: ubuntu-latest
+
+    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
+    steps:
+      - uses: actions/download-artifact@v2
+        with:
+          name: artifact
+          path: dist
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install twine
+
+      - name: Publish
+        env:
+          TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+          TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        run: |
+          twine upload dist/*

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+*.cpp
+
+# scikit-learn specific
+doc/_build/
+doc/auto_examples/
+doc/modules/generated/
+doc/datasets/generated/
+
+# Distribution / packaging
+
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+*/version.py
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+doc/_build/
+doc/generated/
+
+# PyBuilder
+target/
+
+# OS generated files #
+######################
+.DS_Store

AUTHORS

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+Reid Johnson <[email protected]>

CONTRIBUTING

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+Contributions
+=============
+
+Contributions are welcome and greatly appreciated.
+
+Install
+-------
+
+To build and install the package, run::
+
+  python setup.py build_ext --inplace
+  python setup.py install
+
+Testing
+-------
+To run unit tests, run::
+
+  pytest quantile_forest -v
+
+Troubleshooting
+---------------
+If the build fails because SciPy is not installed, ensure OpenBLAS and LAPACK are available and accessible.
+
+On macOS, run::
+
+  brew install openblas
+  brew install lapack
+  export SYSTEM_VERSION_COMPAT=1
+
+Then try rebuilding.