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3mmaRand committed Oct 6, 2023
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2 changes: 1 addition & 1 deletion about.html
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Expand Up @@ -124,7 +124,7 @@ <h1 class="title">About</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/core.html
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Expand Up @@ -269,7 +269,7 @@ <h1 class="title">Core Data Analysis</h1>
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<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/overview.html
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Expand Up @@ -266,7 +266,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_after_workshop.html
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Expand Up @@ -266,7 +266,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_before_workshop.html
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Expand Up @@ -259,7 +259,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/workshop.html
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Expand Up @@ -319,7 +319,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/overview.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_after_workshop.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_before_workshop.html
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Expand Up @@ -423,7 +423,7 @@
</div>
</div>

<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</section><section id="overview" class="slide level2"><h2>Overview</h2>
<ul>
<li>RStudio Projects revisited
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60 changes: 30 additions & 30 deletions core/week-2/workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

Expand Down Expand Up @@ -425,49 +425,49 @@ <h1 class="title">Workshop</h1>
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 136
drwxr-xr-x 2 runner docker 4096 Oct 5 18:32 data
drwxr-xr-x 2 runner docker 4096 Oct 5 18:32 images
-rw-r--r-- 1 runner docker 1597 Oct 5 18:32 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 5 18:32 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69876 Oct 5 18:34 study_before_workshop.html
-rw-r--r-- 1 runner docker 4807 Oct 5 18:32 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Oct 5 18:32 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8550 Oct 5 18:32 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Oct 5 18:34 workshop.rmarkdown</code></pre>
drwxr-xr-x 2 runner docker 4096 Oct 6 12:36 data
drwxr-xr-x 2 runner docker 4096 Oct 6 12:36 images
-rw-r--r-- 1 runner docker 1597 Oct 6 12:36 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 6 12:36 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69876 Oct 6 12:38 study_before_workshop.html
-rw-r--r-- 1 runner docker 4807 Oct 6 12:36 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Oct 6 12:36 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8550 Oct 6 12:36 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Oct 6 12:38 workshop.rmarkdown</code></pre>
</div>
</div>
<p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 136K
drwxr-xr-x 2 runner docker 4.0K Oct 5 18:32 data
drwxr-xr-x 2 runner docker 4.0K Oct 5 18:32 images
-rw-r--r-- 1 runner docker 1.6K Oct 5 18:32 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 5 18:32 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 5 18:34 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 5 18:32 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 5 18:32 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 5 18:32 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 5 18:34 workshop.rmarkdown</code></pre>
drwxr-xr-x 2 runner docker 4.0K Oct 6 12:36 data
drwxr-xr-x 2 runner docker 4.0K Oct 6 12:36 images
-rw-r--r-- 1 runner docker 1.6K Oct 6 12:36 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 6 12:36 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 6 12:38 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 6 12:36 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 6 12:36 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 6 12:36 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 6 12:38 workshop.rmarkdown</code></pre>
</div>
</div>
<p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 144K
drwxr-xr-x 4 runner docker 4.0K Oct 5 18:34 .
drwxr-xr-x 5 runner docker 4.0K Oct 5 18:34 ..
drwxr-xr-x 2 runner docker 4.0K Oct 5 18:32 data
drwxr-xr-x 2 runner docker 4.0K Oct 5 18:32 images
-rw-r--r-- 1 runner docker 1.6K Oct 5 18:32 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 5 18:32 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 5 18:34 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 5 18:32 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 5 18:32 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 5 18:32 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 5 18:34 workshop.rmarkdown</code></pre>
drwxr-xr-x 4 runner docker 4.0K Oct 6 12:38 .
drwxr-xr-x 5 runner docker 4.0K Oct 6 12:37 ..
drwxr-xr-x 2 runner docker 4.0K Oct 6 12:36 data
drwxr-xr-x 2 runner docker 4.0K Oct 6 12:36 images
-rw-r--r-- 1 runner docker 1.6K Oct 6 12:36 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 6 12:36 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 6 12:38 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 6 12:36 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 6 12:36 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 6 12:36 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 6 12:38 workshop.rmarkdown</code></pre>
</div>
</div>
<p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>
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2 changes: 1 addition & 1 deletion core/week-6/overview.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_after_workshop.html
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Expand Up @@ -270,7 +270,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_before_workshop.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/workshop.html
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Expand Up @@ -278,7 +278,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion index.html
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Expand Up @@ -120,7 +120,7 @@ <h1 class="title">Data Analysis for the Group Research Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/omics.html
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Expand Up @@ -269,7 +269,7 @@ <h1 class="title">Omics Data Analysis for Group Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/overview.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/study_after_workshop.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/study_before_workshop.html
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Expand Up @@ -357,7 +357,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
</div>
</div>

<p class="date">5 October, 2023</p>
<p class="date">6 October, 2023</p>
</section>
<section id="omics-workshops" class="slide level2">
<h2>Omics workshops</h2>
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