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3mmaRand committed Apr 2, 2024
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2 changes: 1 addition & 1 deletion core/core.html
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Expand Up @@ -350,7 +350,7 @@ <h1 class="title">Core Data Analysis</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/overview.html
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Expand Up @@ -346,7 +346,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_after_workshop.html
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Expand Up @@ -346,7 +346,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_before_workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/workshop.html
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Expand Up @@ -400,7 +400,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-11/overview.html
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Expand Up @@ -346,7 +346,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-11/study_after_workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-11/study_before_workshop.html
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Expand Up @@ -388,7 +388,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
</div>
</div>

<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</section>
<section id="module-assessment" class="slide level2">
<h2>Module assessment</h2>
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2 changes: 1 addition & 1 deletion core/week-11/workshop.html
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Expand Up @@ -387,7 +387,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/overview.html
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Expand Up @@ -337,7 +337,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_after_workshop.html
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Expand Up @@ -337,7 +337,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_before_workshop.html
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Expand Up @@ -448,7 +448,7 @@
</div>
</div>

<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</section><section id="overview" class="slide level2"><h2>Overview</h2>
<ul>
<li>RStudio Projects revisited
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66 changes: 33 additions & 33 deletions core/week-2/workshop.html
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Expand Up @@ -414,7 +414,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

Expand Down Expand Up @@ -502,52 +502,52 @@ <h1 class="title">Workshop</h1>
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 128
drwxr-xr-x 2 runner docker 4096 Mar 29 15:16 data
drwxr-xr-x 2 runner docker 4096 Mar 29 15:16 images
-rw-r--r-- 1 runner docker 1597 Mar 29 15:16 overview.qmd
-rw-r--r-- 1 runner docker 184 Mar 29 15:16 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4807 Mar 29 15:16 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Mar 29 15:16 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 58063 Mar 29 15:16 workshop.html
-rw-r--r-- 1 runner docker 8550 Mar 29 15:16 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Mar 29 15:18 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4096 Mar 29 15:16 workshop_files</code></pre>
drwxr-xr-x 2 runner docker 4096 Apr 2 15:33 data
drwxr-xr-x 2 runner docker 4096 Apr 2 15:33 images
-rw-r--r-- 1 runner docker 1597 Apr 2 15:33 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 2 15:33 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4807 Apr 2 15:33 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Apr 2 15:33 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 58063 Apr 2 15:33 workshop.html
-rw-r--r-- 1 runner docker 8550 Apr 2 15:33 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Apr 2 15:35 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4096 Apr 2 15:33 workshop_files</code></pre>
</div>
</div>
<p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 128K
drwxr-xr-x 2 runner docker 4.0K Mar 29 15:16 data
drwxr-xr-x 2 runner docker 4.0K Mar 29 15:16 images
-rw-r--r-- 1 runner docker 1.6K Mar 29 15:16 overview.qmd
-rw-r--r-- 1 runner docker 184 Mar 29 15:16 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Mar 29 15:16 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Mar 29 15:16 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Mar 29 15:16 workshop.html
-rw-r--r-- 1 runner docker 8.4K Mar 29 15:16 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Mar 29 15:18 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Mar 29 15:16 workshop_files</code></pre>
drwxr-xr-x 2 runner docker 4.0K Apr 2 15:33 data
drwxr-xr-x 2 runner docker 4.0K Apr 2 15:33 images
-rw-r--r-- 1 runner docker 1.6K Apr 2 15:33 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 2 15:33 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Apr 2 15:33 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 2 15:33 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 2 15:33 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 2 15:33 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 2 15:35 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 2 15:33 workshop_files</code></pre>
</div>
</div>
<p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 136K
drwxr-xr-x 5 runner docker 4.0K Mar 29 15:18 .
drwxr-xr-x 6 runner docker 4.0K Mar 29 15:16 ..
drwxr-xr-x 2 runner docker 4.0K Mar 29 15:16 data
drwxr-xr-x 2 runner docker 4.0K Mar 29 15:16 images
-rw-r--r-- 1 runner docker 1.6K Mar 29 15:16 overview.qmd
-rw-r--r-- 1 runner docker 184 Mar 29 15:16 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Mar 29 15:16 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Mar 29 15:16 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Mar 29 15:16 workshop.html
-rw-r--r-- 1 runner docker 8.4K Mar 29 15:16 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Mar 29 15:18 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Mar 29 15:16 workshop_files</code></pre>
drwxr-xr-x 5 runner docker 4.0K Apr 2 15:35 .
drwxr-xr-x 6 runner docker 4.0K Apr 2 15:33 ..
drwxr-xr-x 2 runner docker 4.0K Apr 2 15:33 data
drwxr-xr-x 2 runner docker 4.0K Apr 2 15:33 images
-rw-r--r-- 1 runner docker 1.6K Apr 2 15:33 overview.qmd
-rw-r--r-- 1 runner docker 184 Apr 2 15:33 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 4.7K Apr 2 15:33 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Apr 2 15:33 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 57K Apr 2 15:33 workshop.html
-rw-r--r-- 1 runner docker 8.4K Apr 2 15:33 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Apr 2 15:35 workshop.rmarkdown
drwxr-xr-x 3 runner docker 4.0K Apr 2 15:33 workshop_files</code></pre>
</div>
</div>
<p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>
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2 changes: 1 addition & 1 deletion core/week-6/overview.html
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Expand Up @@ -345,7 +345,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_after_workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_before_workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/workshop.html
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Expand Up @@ -375,7 +375,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion images/images.html
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Expand Up @@ -218,7 +218,7 @@ <h1 class="title">Image Data Analysis for Group Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion index.html
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Expand Up @@ -181,7 +181,7 @@ <h1 class="title">Data Analysis for the Group Research Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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95 changes: 86 additions & 9 deletions omics/kelly/workshop.html
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2 changes: 1 addition & 1 deletion omics/omics.html
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Expand Up @@ -351,7 +351,7 @@ <h1 class="title">Omics Data Analysis for Group Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/semester-2/workshop.html
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Expand Up @@ -226,7 +226,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/overview.html
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Expand Up @@ -328,7 +328,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/study_after_workshop.html
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Expand Up @@ -321,7 +321,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/study_before_workshop.html
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Expand Up @@ -388,7 +388,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
</div>
</div>

<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</section>
<section id="overview" class="slide level2">
<h2>Overview</h2>
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2 changes: 1 addition & 1 deletion omics/week-3/workshop.html
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Expand Up @@ -416,7 +416,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-4/overview.html
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Expand Up @@ -349,7 +349,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-4/study_after_workshop.html
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Expand Up @@ -321,7 +321,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-4/study_before_workshop.html
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</div>
</div>

<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</section><section id="overview" class="slide level2"><h2>Overview</h2>
<p>In these slides we will:</p>
<div>
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2 changes: 1 addition & 1 deletion omics/week-4/workshop.html
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Expand Up @@ -389,7 +389,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-5/overview.html
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Expand Up @@ -329,7 +329,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-5/study_after_workshop.html
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Expand Up @@ -321,7 +321,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-5/study_before_workshop.html
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</div>
</div>

<p class="date">29 March, 2024</p>
<p class="date">2 April, 2024</p>
</section><section id="overview" class="slide level2"><h2>Overview</h2>
<p>In these slides we will:</p>
<div>
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