Deploying to gh-pages from @ f42e65d 🚀

core/core.html

@@ -337,7 +337,7 @@ <h1 class="title">Core Data Analysis</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-1/overview.html

@@ -333,7 +333,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-1/study_after_workshop.html

@@ -333,7 +333,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-1/study_before_workshop.html

@@ -326,7 +326,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-1/workshop.html

@@ -386,7 +386,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-11/overview.html

@@ -333,7 +333,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-11/study_after_workshop.html

@@ -337,7 +337,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-11/study_before_workshop.html

@@ -326,7 +326,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-11/workshop.html

@@ -339,7 +339,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-2/overview.html

@@ -324,7 +324,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-2/study_after_workshop.html

@@ -324,7 +324,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-2/study_before_workshop.html

@@ -444,7 +444,7 @@
 </div>
 </div>
 
-  <p class="date">20 November, 2023</p>
+  <p class="date">22 November, 2023</p>
 </section><section id="overview" class="slide level2"><h2>Overview</h2>
 <ul>
 <li>RStudio Projects revisited

core/week-2/workshop.html

@@ -400,7 +400,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 
@@ -489,58 +489,58 @@ <h1 class="title">Workshop</h1>
 <div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 212
-drwxr-xr-x 2 runner docker  4096 Nov 20 20:09 data
-drwxr-xr-x 2 runner docker  4096 Nov 20 20:09 images
--rw-r--r-- 1 runner docker  1597 Nov 20 20:09 overview.qmd
--rw-r--r-- 1 runner docker 25383 Nov 20 20:14 study_after_workshop.html
--rw-r--r-- 1 runner docker   184 Nov 20 20:09 study_after_workshop.qmd
--rw-r--r-- 1 runner docker 70840 Nov 20 20:14 study_before_workshop.html
--rw-r--r-- 1 runner docker  4807 Nov 20 20:09 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker 13029 Nov 20 20:09 study_before_workshop.qmd
--rw-r--r-- 1 runner docker 44938 Nov 20 20:09 workshop.html
--rw-r--r-- 1 runner docker  8550 Nov 20 20:09 workshop.qmd
--rw-r--r-- 1 runner docker  8564 Nov 20 20:14 workshop.rmarkdown
-drwxr-xr-x 3 runner docker  4096 Nov 20 20:09 workshop_files</code></pre>
+drwxr-xr-x 2 runner docker  4096 Nov 22 19:23 data
+drwxr-xr-x 2 runner docker  4096 Nov 22 19:23 images
+-rw-r--r-- 1 runner docker  1597 Nov 22 19:23 overview.qmd
+-rw-r--r-- 1 runner docker 25383 Nov 22 19:28 study_after_workshop.html
+-rw-r--r-- 1 runner docker   184 Nov 22 19:23 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker 70840 Nov 22 19:28 study_before_workshop.html
+-rw-r--r-- 1 runner docker  4807 Nov 22 19:23 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker 13029 Nov 22 19:23 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker 44938 Nov 22 19:23 workshop.html
+-rw-r--r-- 1 runner docker  8550 Nov 22 19:23 workshop.qmd
+-rw-r--r-- 1 runner docker  8564 Nov 22 19:28 workshop.rmarkdown
+drwxr-xr-x 3 runner docker  4096 Nov 22 19:23 workshop_files</code></pre>
 </div>
 </div>
 <p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 212K
-drwxr-xr-x 2 runner docker 4.0K Nov 20 20:09 data
-drwxr-xr-x 2 runner docker 4.0K Nov 20 20:09 images
--rw-r--r-- 1 runner docker 1.6K Nov 20 20:09 overview.qmd
--rw-r--r-- 1 runner docker  25K Nov 20 20:14 study_after_workshop.html
--rw-r--r-- 1 runner docker  184 Nov 20 20:09 study_after_workshop.qmd
--rw-r--r-- 1 runner docker  70K Nov 20 20:14 study_before_workshop.html
--rw-r--r-- 1 runner docker 4.7K Nov 20 20:09 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker  13K Nov 20 20:09 study_before_workshop.qmd
--rw-r--r-- 1 runner docker  44K Nov 20 20:09 workshop.html
--rw-r--r-- 1 runner docker 8.4K Nov 20 20:09 workshop.qmd
--rw-r--r-- 1 runner docker 8.4K Nov 20 20:14 workshop.rmarkdown
-drwxr-xr-x 3 runner docker 4.0K Nov 20 20:09 workshop_files</code></pre>
+drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 data
+drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 images
+-rw-r--r-- 1 runner docker 1.6K Nov 22 19:23 overview.qmd
+-rw-r--r-- 1 runner docker  25K Nov 22 19:28 study_after_workshop.html
+-rw-r--r-- 1 runner docker  184 Nov 22 19:23 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker  70K Nov 22 19:28 study_before_workshop.html
+-rw-r--r-- 1 runner docker 4.7K Nov 22 19:23 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker  13K Nov 22 19:23 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker  44K Nov 22 19:23 workshop.html
+-rw-r--r-- 1 runner docker 8.4K Nov 22 19:23 workshop.qmd
+-rw-r--r-- 1 runner docker 8.4K Nov 22 19:28 workshop.rmarkdown
+drwxr-xr-x 3 runner docker 4.0K Nov 22 19:23 workshop_files</code></pre>
 </div>
 </div>
 <p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
 <div class="cell">
 <div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>total 220K
-drwxr-xr-x 5 runner docker 4.0K Nov 20 20:14 .
-drwxr-xr-x 6 runner docker 4.0K Nov 20 20:14 ..
-drwxr-xr-x 2 runner docker 4.0K Nov 20 20:09 data
-drwxr-xr-x 2 runner docker 4.0K Nov 20 20:09 images
--rw-r--r-- 1 runner docker 1.6K Nov 20 20:09 overview.qmd
--rw-r--r-- 1 runner docker  25K Nov 20 20:14 study_after_workshop.html
--rw-r--r-- 1 runner docker  184 Nov 20 20:09 study_after_workshop.qmd
--rw-r--r-- 1 runner docker  70K Nov 20 20:14 study_before_workshop.html
--rw-r--r-- 1 runner docker 4.7K Nov 20 20:09 study_before_workshop.ipynb
--rw-r--r-- 1 runner docker  13K Nov 20 20:09 study_before_workshop.qmd
--rw-r--r-- 1 runner docker  44K Nov 20 20:09 workshop.html
--rw-r--r-- 1 runner docker 8.4K Nov 20 20:09 workshop.qmd
--rw-r--r-- 1 runner docker 8.4K Nov 20 20:14 workshop.rmarkdown
-drwxr-xr-x 3 runner docker 4.0K Nov 20 20:09 workshop_files</code></pre>
+drwxr-xr-x 5 runner docker 4.0K Nov 22 19:28 .
+drwxr-xr-x 6 runner docker 4.0K Nov 22 19:27 ..
+drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 data
+drwxr-xr-x 2 runner docker 4.0K Nov 22 19:23 images
+-rw-r--r-- 1 runner docker 1.6K Nov 22 19:23 overview.qmd
+-rw-r--r-- 1 runner docker  25K Nov 22 19:28 study_after_workshop.html
+-rw-r--r-- 1 runner docker  184 Nov 22 19:23 study_after_workshop.qmd
+-rw-r--r-- 1 runner docker  70K Nov 22 19:28 study_before_workshop.html
+-rw-r--r-- 1 runner docker 4.7K Nov 22 19:23 study_before_workshop.ipynb
+-rw-r--r-- 1 runner docker  13K Nov 22 19:23 study_before_workshop.qmd
+-rw-r--r-- 1 runner docker  44K Nov 22 19:23 workshop.html
+-rw-r--r-- 1 runner docker 8.4K Nov 22 19:23 workshop.qmd
+-rw-r--r-- 1 runner docker 8.4K Nov 22 19:28 workshop.rmarkdown
+drwxr-xr-x 3 runner docker 4.0K Nov 22 19:23 workshop_files</code></pre>
 </div>
 </div>
 <p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>

core/week-6/overview.html

@@ -332,7 +332,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-6/study_after_workshop.html

@@ -326,7 +326,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-6/study_before_workshop.html

@@ -326,7 +326,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

core/week-6/workshop.html

@@ -361,7 +361,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

images/images.html

@@ -205,7 +205,7 @@ <h1 class="title">Image Data Analysis for Group Project</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 
@@ -318,7 +318,7 @@ <h1 class="title">Image Data Analysis for Group Project</h1>
 <p>You now have a dataframe with all the tracking data which is relatively easy to summarise and plot using tools you know.</p>
 <p>There is an example RStudio project containing this code here: <a href="https://github.com/3mmaRand/tips">tips</a>. You can download and open directly in RStudio using the following code. Since this is an RStudio Project, do not run the code from inside a project:</p>
 <div class="cell">
-<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r code-with-copy"><code class="sourceCode R"><span><span class="fu">usethis</span><span class="fu">::</span><span class="fu">use_course</span><span class="op">(</span><span class="st">"3mmaRand/tips"</span><span class="op">)</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r code-with-copy"><code class="sourceCode R"><span><span class="fu">usethis</span><span class="fu">::</span><span class="fu">use_course</span><span class="op">(</span>url <span class="op">=</span> <span class="st">"3mmaRand/tips"</span><span class="op">)</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
 
 

index.html

@@ -145,7 +145,7 @@ <h1 class="title">Data Analysis for the Group Research Project</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/omics.html

@@ -319,7 +319,7 @@ <h1 class="title">Omics Data Analysis for Group Project</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-3/overview.html

@@ -297,7 +297,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-3/study_after_workshop.html

@@ -290,7 +290,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-3/study_before_workshop.html

@@ -384,7 +384,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
 </div>
 </div>
 
-  <p class="date">20 November, 2023</p>
+  <p class="date">22 November, 2023</p>
 </section>
 <section id="overview" class="slide level2">
 <h2>Overview</h2>

omics/week-3/workshop.html

@@ -384,7 +384,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-4/overview.html

@@ -317,7 +317,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-4/study_after_workshop.html

@@ -290,7 +290,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-4/study_before_workshop.html

@@ -442,7 +442,7 @@
 </div>
 </div>
 
-  <p class="date">20 November, 2023</p>
+  <p class="date">22 November, 2023</p>
 </section><section id="overview" class="slide level2"><h2>Overview</h2>
 <p>In these slides we will:</p>
 <div>

omics/week-4/workshop.html

@@ -357,7 +357,7 @@ <h1 class="title">Workshop</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-5/overview.html

@@ -298,7 +298,7 @@ <h1 class="title">Overview</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-5/study_after_workshop.html

@@ -290,7 +290,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">20 November, 2023</p>
+      <p class="date">22 November, 2023</p>
     </div>
   </div>
 

omics/week-5/study_before_workshop.html

@@ -442,7 +442,7 @@
 </div>
 </div>
 
-  <p class="date">20 November, 2023</p>
+  <p class="date">22 November, 2023</p>
 </section><section id="overview" class="slide level2"><h2>Overview</h2>
 <p>In these slides we will:</p>
 <div>