fix: conflicts_prefer(GenomicRanges::setdiff)

omics/week-4/results/s30_fgf_only.csv

@@ -0,0 +1,27 @@
+xenbase_gene_id,S30_C_5,S30_C_6,S30_C_A,S30_F_5,S30_F_6,S30_F_A
+XB-GENE-1018260,0,0,0,10,2,16
+XB-GENE-17330117,0,0,0,13,4,17
+XB-GENE-17332184,0,0,0,6,19,6
+XB-GENE-17342281,0,0,0,42,10,35
+XB-GENE-485208,0,0,0,73,17,56
+XB-GENE-485796,0,0,0,51,10,44
+XB-GENE-486919,0,0,0,108,18,80
+XB-GENE-6252072,0,0,0,35,7,38
+XB-GENE-6252388,0,0,0,35,7,35
+XB-GENE-6252857,0,0,0,21,1,22
+XB-GENE-6253886,0,0,0,2,1,20
+XB-GENE-6254394,0,0,0,73,6,63
+XB-GENE-6466680,0,0,0,21,2,22
+XB-GENE-6488002,0,0,0,10,1,26
+XB-GENE-6488182,0,0,0,11,5,20
+XB-GENE-864885,0,0,0,14,5,14
+XB-GENE-865003,0,0,0,68,49,43
+XB-GENE-865180,0,0,0,19,5,32
+XB-GENE-865309,0,0,0,56,9,66
+XB-GENE-865376,0,0,0,39,3,32
+XB-GENE-865554,0,0,0,43,8,35
+XB-GENE-865614,0,0,0,28,4,70
+XB-GENE-866599,0,0,0,14,9,9
+XB-GENE-920126,0,0,0,11,4,15
+XB-GENE-971141,0,0,0,15,1,17
+XB-GENE-972091,0,0,0,5,5,29

omics/week-4/workshop.qmd

@@ -191,6 +191,11 @@ write_csv(s30_fgf_only, "results/s30_fgf_only.csv")
 #---CODING ANSWER---
 library(DESeq2)
 ```
+```{r}
+#| echo: false
+conflicts_prefer(GenomicRanges::setdiff)
+```
+
 
 A DEseqDataSet object is a custom data type that is used by the DESeq2. Custom data types are common in the Bioconductor packages. They are used to store data in a way that is useful for the analysis. These data types typically have data, transformed data, metadata and experimental designs within them.
 
@@ -456,7 +461,7 @@ prog_hspc |>
 
 Note that if we knew there were some rows that were all zero across both cerll types, we would need to add `|> filter(sum(c_across(Prog_001:Prog_852)) != 0)`
 
-🎬 Npw you find the genes that are 0 in every column for the HSPC cells:
+🎬 Now you find the genes that are 0 in every column for the HSPC cells:
 
 ```{r}
 #| echo: false