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3mmaRand committed Oct 8, 2023
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2 changes: 1 addition & 1 deletion core/core.html
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Expand Up @@ -269,7 +269,7 @@ <h1 class="title">Core Data Analysis</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/overview.html
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Expand Up @@ -266,7 +266,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_after_workshop.html
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Expand Up @@ -266,7 +266,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/study_before_workshop.html
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Expand Up @@ -259,7 +259,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-1/workshop.html
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Expand Up @@ -319,7 +319,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/overview.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_after_workshop.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-2/study_before_workshop.html
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Expand Up @@ -423,7 +423,7 @@
</div>
</div>

<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</section><section id="overview" class="slide level2"><h2>Overview</h2>
<ul>
<li>RStudio Projects revisited
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60 changes: 30 additions & 30 deletions core/week-2/workshop.html
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Expand Up @@ -339,7 +339,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

Expand Down Expand Up @@ -425,49 +425,49 @@ <h1 class="title">Workshop</h1>
<div class="sourceCode cell-code" id="cb9"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb9-1"><a href="#cb9-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-l</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 136
drwxr-xr-x 2 runner docker 4096 Oct 7 10:56 data
drwxr-xr-x 2 runner docker 4096 Oct 7 10:56 images
-rw-r--r-- 1 runner docker 1597 Oct 7 10:56 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 7 10:56 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69876 Oct 7 10:58 study_before_workshop.html
-rw-r--r-- 1 runner docker 4807 Oct 7 10:56 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Oct 7 10:56 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8550 Oct 7 10:56 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Oct 7 10:58 workshop.rmarkdown</code></pre>
drwxr-xr-x 2 runner docker 4096 Oct 8 10:06 data
drwxr-xr-x 2 runner docker 4096 Oct 8 10:06 images
-rw-r--r-- 1 runner docker 1597 Oct 8 10:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 8 10:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69876 Oct 8 10:09 study_before_workshop.html
-rw-r--r-- 1 runner docker 4807 Oct 8 10:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13029 Oct 8 10:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8550 Oct 8 10:06 workshop.qmd
-rw-r--r-- 1 runner docker 8564 Oct 8 10:09 workshop.rmarkdown</code></pre>
</div>
</div>
<p>You can use more than one option at once. The <code>-h</code> option stands for “human readable” and makes the file sizes easier to understand for humans:</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb11"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb11-1"><a href="#cb11-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-hl</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 136K
drwxr-xr-x 2 runner docker 4.0K Oct 7 10:56 data
drwxr-xr-x 2 runner docker 4.0K Oct 7 10:56 images
-rw-r--r-- 1 runner docker 1.6K Oct 7 10:56 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 7 10:56 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 7 10:58 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 7 10:56 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 7 10:56 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 7 10:56 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 7 10:58 workshop.rmarkdown</code></pre>
drwxr-xr-x 2 runner docker 4.0K Oct 8 10:06 data
drwxr-xr-x 2 runner docker 4.0K Oct 8 10:06 images
-rw-r--r-- 1 runner docker 1.6K Oct 8 10:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 8 10:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 8 10:09 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 8 10:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 8 10:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 8 10:06 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 8 10:09 workshop.rmarkdown</code></pre>
</div>
</div>
<p>The <code>-a</code> option stands for “all” and shows us all the files, including hidden files.</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb13"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a><span class="fu">ls</span> <span class="at">-alh</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stdout">
<pre><code>total 144K
drwxr-xr-x 4 runner docker 4.0K Oct 7 10:58 .
drwxr-xr-x 5 runner docker 4.0K Oct 7 10:58 ..
drwxr-xr-x 2 runner docker 4.0K Oct 7 10:56 data
drwxr-xr-x 2 runner docker 4.0K Oct 7 10:56 images
-rw-r--r-- 1 runner docker 1.6K Oct 7 10:56 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 7 10:56 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 7 10:58 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 7 10:56 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 7 10:56 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 7 10:56 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 7 10:58 workshop.rmarkdown</code></pre>
drwxr-xr-x 4 runner docker 4.0K Oct 8 10:09 .
drwxr-xr-x 5 runner docker 4.0K Oct 8 10:09 ..
drwxr-xr-x 2 runner docker 4.0K Oct 8 10:06 data
drwxr-xr-x 2 runner docker 4.0K Oct 8 10:06 images
-rw-r--r-- 1 runner docker 1.6K Oct 8 10:06 overview.qmd
-rw-r--r-- 1 runner docker 184 Oct 8 10:06 study_after_workshop.qmd
-rw-r--r-- 1 runner docker 69K Oct 8 10:09 study_before_workshop.html
-rw-r--r-- 1 runner docker 4.7K Oct 8 10:06 study_before_workshop.ipynb
-rw-r--r-- 1 runner docker 13K Oct 8 10:06 study_before_workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 8 10:06 workshop.qmd
-rw-r--r-- 1 runner docker 8.4K Oct 8 10:09 workshop.rmarkdown</code></pre>
</div>
</div>
<p>You can move about with the <code>cd</code> command, which stands for “change directory”. You can use it to move into a directory by specifying the path to the directory:</p>
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2 changes: 1 addition & 1 deletion core/week-6/overview.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_after_workshop.html
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Expand Up @@ -270,7 +270,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/study_before_workshop.html
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Expand Up @@ -257,7 +257,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion core/week-6/workshop.html
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Expand Up @@ -278,7 +278,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion index.html
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Expand Up @@ -120,7 +120,7 @@ <h1 class="title">Data Analysis for the Group Research Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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10 changes: 5 additions & 5 deletions omics/omics.html
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Expand Up @@ -174,25 +174,25 @@
<ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../omics/week-4/overview.qmd" class="sidebar-item-text sidebar-link">
<a href="../omics/week-4/overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">About</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../omics/week-4/study_before_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../omics/week-4/study_before_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Prepare!</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../omics/week-4/workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../omics/week-4/workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Workshop</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../omics/week-4/study_after_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../omics/week-4/study_after_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Consolidate!</span></a>
</div>
</li>
Expand Down Expand Up @@ -269,7 +269,7 @@ <h1 class="title">Omics Data Analysis for Group Project</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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10 changes: 5 additions & 5 deletions omics/week-3/overview.html
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<ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/overview.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">About</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_before_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_before_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Prepare!</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Workshop</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_after_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_after_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Consolidate!</span></a>
</div>
</li>
Expand Down Expand Up @@ -266,7 +266,7 @@ <h1 class="title">Overview</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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10 changes: 5 additions & 5 deletions omics/week-3/study_after_workshop.html
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<ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/overview.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">About</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_before_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_before_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Prepare!</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Workshop</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_after_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_after_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Consolidate!</span></a>
</div>
</li>
Expand Down Expand Up @@ -259,7 +259,7 @@ <h1 class="title">Independent Study to consolidate this week</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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2 changes: 1 addition & 1 deletion omics/week-3/study_before_workshop.html
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Expand Up @@ -357,7 +357,7 @@ <h1 class="title">Independent Study to prepare for workshop</h1>
</div>
</div>

<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</section>
<section id="overview" class="slide level2">
<h2>Overview</h2>
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10 changes: 5 additions & 5 deletions omics/week-3/workshop.html
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Expand Up @@ -210,25 +210,25 @@
<ul id="quarto-sidebar-section-2" class="collapse list-unstyled sidebar-section depth1 show">
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/overview.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/overview.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">About</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_before_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_before_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Prepare!</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Workshop</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../../omics/week-4/study_after_workshop.qmd" class="sidebar-item-text sidebar-link">
<a href="../../omics/week-4/study_after_workshop.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Consolidate!</span></a>
</div>
</li>
Expand Down Expand Up @@ -359,7 +359,7 @@ <h1 class="title">Workshop</h1>
<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">7 October, 2023</p>
<p class="date">8 October, 2023</p>
</div>
</div>

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