BUG: export option in slurm call

Guessing this should be QSUBOPTS in both cases
ANTsX · Aug 4, 2023 · 8285c6d · 8285c6d
1 parent 91593fb
commit 8285c6d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Scripts/antsMultivariateTemplateConstruction2.sh b/Scripts/antsMultivariateTemplateConstruction2.sh
@@ -1197,7 +1197,7 @@ if [[ "$RIGID" -eq 1 ]];
             jobIDs="$jobIDs $id"
         elif [[ $DOQSUB -eq 5 ]];
             then
-            id=`sbatch --job-name=antsrigid --export= $QSUBOPTS --nodes=1 --cpus-per-task=1 --time=${WALLTIME} --mem=${MEMORY} $qscript | rev | cut -f1 -d\ | rev`
+            id=`sbatch --job-name=antsrigid --export=${QSUBOPTS} --nodes=1 --cpus-per-task=1 --time=${WALLTIME} --mem=${MEMORY} $qscript | rev | cut -f1 -d\ | rev`
             jobIDs="$jobIDs $id"
             sleep 0.5
         elif [[ $DOQSUB -eq 0 ]];
@@ -1577,7 +1577,7 @@ while [[ $i -lt ${ITERATIONLIMIT} ]];
             echo '#!/bin/sh' > $qscript
             echo -e "$SCRIPTPREPEND" >> $qscript
             echo -e "$exe" >> $qscript
-            id=`sbatch --job-name=antsdef${i} --export= --nodes=1 --cpus-per-task=1 --time=${WALLTIME} --mem=${MEMORY} $QSUBOPTS $qscript | rev | cut -f1 -d\ | rev`
+            id=`sbatch --job-name=antsdef${i} --export=${QSUBOPTS} --nodes=1 --cpus-per-task=1 --time=${WALLTIME} --mem=${MEMORY} $QSUBOPTS $qscript | rev | cut -f1 -d\ | rev`
             jobIDs="$jobIDs $id"
             sleep 0.5
         elif [[ $DOQSUB -eq 0 ]];