Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Refactor antsTransformInfo to add some error handling and compute determinant #1712

Merged
merged 1 commit into from
Jun 12, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
104 changes: 101 additions & 3 deletions Examples/antsTransformInfo.cxx
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,9 @@

#include "antsCommandLineParser.h"
#include "itkTransformFileReader.h"
#include "itkMatrixOffsetTransformBase.h"
#include "itkCompositeTransform.h"


#include <sstream>

Expand Down Expand Up @@ -72,16 +75,111 @@ antsTransformInfo(std::vector<std::string> args, std::ostream * /*out_stream = n
};
Cleanup_argv cleanup_argv(argv, argc + 1);

using ReadScalarType = double;

for (int i = 1; i < argc; i++)
{

std::cout << "Transform file: " << argv[i] << std::endl;

itk::TransformFileReader::Pointer reader = itk::TransformFileReader::New();
using TransformReaderType = itk::TransformFileReaderTemplate<ReadScalarType>;
auto reader = TransformReaderType::New();

reader->SetFileName(argv[i]);
reader->Update();
try
{
reader->Update();
}
catch (const itk::ExceptionObject & excp)
{
std::cerr << "Error while reading the transform file" << std::endl;
std::cerr << excp << std::endl;
std::cerr << "[FAILED]" << std::endl;
return EXIT_FAILURE;
}

const TransformReaderType::TransformListType * transforms = reader->GetTransformList();
std::cout << "Number of transforms = " << transforms->size() << std::endl;

unsigned int Dimension = transforms->front()->GetInputSpaceDimension();


for (auto it = transforms->begin(); it != transforms->end(); ++it)
{

std::cout << *(reader->GetTransformList()->begin()) << std::endl;
if (Dimension == 3)
{
using ReadCompositeTransformType3D = itk::CompositeTransform<ReadScalarType, 3>;
if (!strcmp((*it)->GetNameOfClass(), "CompositeTransform"))
{
ReadCompositeTransformType3D::Pointer compositeRead =
static_cast<ReadCompositeTransformType3D *>((*it).GetPointer());
const ReadCompositeTransformType3D::TransformQueueType & compositeTransformQueue =
compositeRead->GetTransformQueue();
std::cout << "Number of transforms in composite queue = " << compositeTransformQueue.size() << std::endl;

for (auto it2 = compositeTransformQueue.begin(); it2 != compositeTransformQueue.end(); ++it2)
{

using TransformType3D = itk::MatrixOffsetTransformBase<double, 3, 3>;
TransformType3D * itktx3d = dynamic_cast<TransformType3D *>((*it2).GetPointer());

if (itktx3d)
{
itktx3d->Print(std::cout);
std::cout << "Determinant: " << vnl_determinant(itktx3d->GetMatrix().GetVnlMatrix()) << std::endl;
}
else
{
it2->Print(std::cout);
}
}
}
else
{
using TransformType3D = itk::MatrixOffsetTransformBase<double, 3, 3>;
TransformType3D * itktx3d = dynamic_cast<TransformType3D *>((*it).GetPointer());
itktx3d->Print(std::cout);
std::cout << "Determinant: " << vnl_determinant(itktx3d->GetMatrix().GetVnlMatrix()) << std::endl;
}
}
else if (Dimension == 2)
{
using ReadCompositeTransformType2D = itk::CompositeTransform<ReadScalarType, 2>;
if (!strcmp((*it)->GetNameOfClass(), "CompositeTransform"))
{
ReadCompositeTransformType2D::Pointer compositeRead =
static_cast<ReadCompositeTransformType2D *>((*it).GetPointer());
const ReadCompositeTransformType2D::TransformQueueType & compositeTransformQueue =
compositeRead->GetTransformQueue();
std::cout << "Number of transforms in composite queue = " << compositeTransformQueue.size() << std::endl;

for (auto it2 = compositeTransformQueue.begin(); it2 != compositeTransformQueue.end(); ++it2)
{

using TransformType2D = itk::MatrixOffsetTransformBase<double, 2, 2>;
TransformType2D * itktx2d = dynamic_cast<TransformType2D *>((*it2).GetPointer());

if (itktx2d)
{
itktx2d->Print(std::cout);
std::cout << "Determinant: " << vnl_determinant(itktx2d->GetMatrix().GetVnlMatrix()) << std::endl;
}
else
{
it2->Print(std::cout);
}
}
}
else
{
using TransformType2D = itk::MatrixOffsetTransformBase<double, 2, 2>;
TransformType2D * itktx2d = dynamic_cast<TransformType2D *>((*it).GetPointer());
itktx2d->Print(std::cout);
std::cout << "Determinant: " << vnl_determinant(itktx2d->GetMatrix().GetVnlMatrix()) << std::endl;
}
}
}
}

return EXIT_SUCCESS;
Expand Down