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1. atac_chip_preprocess atac_chip_preprocess Public

   Preprocessing workflow for ATAC-seq and ChIP-seq data

   Nextflow 1

2. rnaseq_preprocess rnaseq_preprocess Public

   Preprocessing of RNA-seq data using salmon and tximport

   Nextflow 1

3. circtools circtools Public

   Functions related to analysis of circadian / circular data in R.

   R 1

4. bam2bedgraph bam2bedgraph Public

   Bash wrappers to create, average and normalize bigwig files

   Shell

5. SigGenes SigGenes Public

   Automated differential expression and signature generation from bulk and single-cell data

   R 1

6. bender_et_al_2024 bender_et_al_2024 Public

   Code documentation for our paper Bender et al (2024) - EMBO - doi: 10.1038/s44318-024-00295-y

   HTML