GitHub - AlexanderAivazidis/spatialTranscriptomics: Usefool tools for spatial transcriptomics

Name		Name	Last commit message	Last commit date
Latest commit History 108 Commits
accuracy		accuracy
figures		figures
markerGenes		markerGenes
rScripts		rScripts
ALSgenes_medianExpression.csv		ALSgenes_medianExpression.csv
ALSgenes_medianExpression.pdf		ALSgenes_medianExpression.pdf
ALSgenes_medianExpression.txt		ALSgenes_medianExpression.txt
AstrocyteZonationGenesP02_ExpressionInEachNeuronSubtype.pdf		AstrocyteZonationGenesP02_ExpressionInEachNeuronSubtype.pdf
AstrocyteZonationGenesP02_ExpressionPerLayer.pdf		AstrocyteZonationGenesP02_ExpressionPerLayer.pdf
AstrocyteZonationGenes_ExpressionInEachNeuronSubtype.pdf		AstrocyteZonationGenes_ExpressionInEachNeuronSubtype.pdf
AstrocyteZonationGenes_ExpressionPerLayer.pdf		AstrocyteZonationGenes_ExpressionPerLayer.pdf
Cer_Kptn_N12_NormDataALL_filter50_noShrink_DESeq2v16.out		Cer_Kptn_N12_NormDataALL_filter50_noShrink_DESeq2v16.out
FrC_Kptn_N10_NormDataALL_filter30_noShrink_DESeq2v16.out		FrC_Kptn_N10_NormDataALL_filter30_noShrink_DESeq2v16.out
Hipp_Kptn_N12_NormDataALL_filter50_noShrink_DESeq2v16.out		Hipp_Kptn_N12_NormDataALL_filter50_noShrink_DESeq2v16.out
Holt_astrocytes_spatial_map_Shalev_p56_p_005.csv		Holt_astrocytes_spatial_map_Shalev_p56_p_005.csv
Holt_astrocytes_spatial_map_Shalev_p56_p_02.csv		Holt_astrocytes_spatial_map_Shalev_p56_p_02.csv
MNDgenes_medianExpression.csv		MNDgenes_medianExpression.csv
MNDgenes_medianExpression.pdf		MNDgenes_medianExpression.pdf
NEUN_ExpressionInEachNeuronSubtype.pdf		NEUN_ExpressionInEachNeuronSubtype.pdf
NEUN_ExpressionPerLayer.pdf		NEUN_ExpressionPerLayer.pdf
Rbfox3_ExpressionInEachNeuronSubtype_HumanMTG.pdf		Rbfox3_ExpressionInEachNeuronSubtype_HumanMTG.pdf
Rbfox3_ExpressionPerLayer.pdf		Rbfox3_ExpressionPerLayer.pdf
Stri_Kptn_N10_NormDataALL_filter50_noShrink_DESeq2v16.out		Stri_Kptn_N10_NormDataALL_filter50_noShrink_DESeq2v16.out
Thy1_ExpressionInEachNeuronSubtype.pdf		Thy1_ExpressionInEachNeuronSubtype.pdf
Thy1_ExpressionInEachNeuronSubtype_HumanMTG.pdf		Thy1_ExpressionInEachNeuronSubtype_HumanMTG.pdf
accuracy.RData		accuracy.RData
accuracy_Fscore_ALM-VISp_100markers_lossFunction1.RData		accuracy_Fscore_ALM-VISp_100markers_lossFunction1.RData
accuracy_Fscore_ALM-VISp_100markers_lossFunction2.RData		accuracy_Fscore_ALM-VISp_100markers_lossFunction2.RData
accuracy_Fscore_ALMglutamatergic_36markers_lossFunction1.RData		accuracy_Fscore_ALMglutamatergic_36markers_lossFunction1.RData
accuracy_Fscore_VISpglutamatergic_36markers_lossFunction1.RData		accuracy_Fscore_VISpglutamatergic_36markers_lossFunction1.RData
accuracy_Fscore_VISpglutamatergic_36markers_lossFunction2.RData		accuracy_Fscore_VISpglutamatergic_36markers_lossFunction2.RData
ar_816499451_STAR_results.csv		ar_816499451_STAR_results.csv
celltypeMarkers_MouseCortex.csv		celltypeMarkers_MouseCortex.csv
celltypeMarkers_medianExpression.csv		celltypeMarkers_medianExpression.csv
celltypeMarkers_medianExpression.pdf		celltypeMarkers_medianExpression.pdf
medianExpr_KidneyProject_ Foetal_Epithelium_and_Vascular .RData		medianExpr_KidneyProject_ Foetal_Epithelium_and_Vascular .RData
medianExpr_KidneyProject_ Foetal_Immune .RData		medianExpr_KidneyProject_ Foetal_Immune .RData
medianExpr_KidneyProject_ Normal_Epithelium_and_Vascular_without_PT .RData		medianExpr_KidneyProject_ Normal_Epithelium_and_Vascular_without_PT .RData
medianExpr_KidneyProject_ Normal_Immune .RData		medianExpr_KidneyProject_ Normal_Immune .RData
medianExpr_KidneyProject_ Normal_Proximal_Tubules .RData		medianExpr_KidneyProject_ Normal_Proximal_Tubules .RData
medianExpr_KidneyProject_ Tumour_Epithelium_and_Vascular .RData		medianExpr_KidneyProject_ Tumour_Epithelium_and_Vascular .RData
medianExpr_KidneyProject_ Tumour_Immune .RData		medianExpr_KidneyProject_ Tumour_Immune .RData
medianExpr_logCPM_ALM-VISp.RData		medianExpr_logCPM_ALM-VISp.RData
propExpr_logCPM_ALM-VISp.RData		propExpr_logCPM_ALM-VISp.RData
targets_associated_with_amyotrophic_lateral_sclerosis.csv		targets_associated_with_amyotrophic_lateral_sclerosis.csv
targets_associated_with_motor_neuron_disease (2).csv		targets_associated_with_motor_neuron_disease (2).csv

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