Update links in notebooks after merge to main.

AllenInstitute · Mar 20, 2024 · 2fee9ff · 2fee9ff
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commit 2fee9ff
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diff --git a/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb b/notebooks/general_accessing_10x_snRNASeq_tutorial.ipynb
@@ -623,7 +623,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Below is a function that can be used to load specific genes from the from the full set of data in the WHB dataset. Adjust the chunk size down if you find your system still running out of memory. Additionally, reduce the number of genes if you still have issues. Note that the funciton can load either the raw expression data or the log2 data. The full code of this function can be found [here](https://github.com/AllenInstitute/abc_atlas_access/blob/4c4a7dfb124971b543de2cb737d059e7cabd620a/src/abc_atlas_access/abc_atlas_cache/anndata_utils.py#L9)"
+    "Below is a function that can be used to load specific genes from the from the full set of data in the WHB dataset. Adjust the chunk size down if you find your system still running out of memory. Additionally, reduce the number of genes if you still have issues. Note that the funciton can load either the raw expression data or the log2 data. The full code of this function can be found [here](https://github.com/AllenInstitute/abc_atlas_access/blob/7a53a08cff0f07e9b67911c0db04fa6932fa6e9d/src/abc_atlas_access/abc_atlas_cache/anndata_utils.py#L9)"
    ]
   },
   {

diff --git a/notebooks/getting_started.ipynb b/notebooks/getting_started.ipynb
@@ -105,7 +105,7 @@
     }
    ],
    "source": [
-    "pip install -U git+https://github.com/alleninstitute/abc_atlas_access@u/morriscb/updateJupyterBook"
+    "pip install -U git+https://github.com/alleninstitute/abc_atlas_access"
    ]
   },
   {
-Original file line number
+Diff line change
@@ Expand Up / @@ -105,7 +105,7 @@ @@
         }
        ],
        "source": [
-        "pip install -U git+https://github.com/alleninstitute/abc_atlas_access@u/morriscb/updateJupyterBook"
+        "pip install -U git+https://github.com/alleninstitute/abc_atlas_access"
        ]
       },
       {
@@ Expand Down @@