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Develop #262

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Develop #262

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RussTorres
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@RussTorres RussTorres commented Dec 3, 2024 •
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merge dev branch including:

  • fit_multiple_solves for multi-stage rough alignment
  • improved montage QC (faster & modern Bokeh)
  • fixes long-standing make_montage_scapes bug (close_stack=False race condition)
  • fixes existing tests
  • pyproject.toml w/ pixi features
  • renderclient_schemas typo fix

RussTorres and others added 30 commits February 21, 2024 16:45
@RussTorres
Update renderclient_schemas.py
a10646e 
Fixing bug mentioned in #254
@RussTorres
asap: update names to asap for deployment
d8cff3f
@RussTorres
requirements: explicit version for argschema and marshmallow based on…
2d4a7fa 
… deps
@rathsidd
new module first attempt for applying multiple transforms
5a4b9fa
@rathsidd
edited render connect
30a2218
@rathsidd
new class name
2a0062b
@rathsidd
new class name
dbefc1f
@rathsidd
removed spurious files
24c9117
@rathsidd
edited fit_multiple_solves.py and added corresponding schema to schem…
9987de6 
…as.py
@rathsidd
edited fit_multiple_solves.py and added corresponding schema to schem…
5dfadb8 
…as.py
@rathsidd
edited fit_multiple_solves.py for outstack and output, edited schemas…
d88cf37 
….py to include ArgSchema and DefaultSchema into the scham type for the module
@RussTorres
gitignore: add test-reports
aa7a597
@RussTorres
materialize: validation update for newer pillow
79b4491
@RussTorres
test: qc tests can skip failed imports -- allows tests to run (fail) …
3940e19 
…with numpyv2
@RussTorres
pyproject: add pyproject w/ pixi support
b81a155
@RussTorres
Merge pull request #257 from AllenInstitute/test_fix
aa05178 
Test fix
@RussTorres
Merge pull request #255 from AllenInstitute/rc_schemas_validate_bugfix
29124c3 
Update renderclient_schemas.py
@rathsidd
resolved comments and edits on fit_multiple_solves and schemas, pendi…
0ca0464 
…ng linter
@rathsidd
linted fit_multiple_solves.py and linted schemas.py
49ec508
@RussTorres
fit_multiple: add smoke test
6cce460
@RussTorres
fit_multiple: fix output zs syntax and translation outputs
09db703
@RussTorres
fit_multiple: change stack name handling
b1b1a95
@RussTorres
fit_multiple: update to numpy.ptp for numpy>=2
7a846a5
@RussTorres
Merge pull request #256 from AllenInstitute/APPLY_MULTIPLE_SOLVES
42b9f37 
applying_rigid_affine_tps_ra
@RussTorres
pyproject: remove jinja dep, pin pymongo, add jupyterlab feature
628f2a0
@RussTorres
pyproject: remove commented reqs
8dcdce8
@rathsidd
Fixed close_stack option in make_montage_scapes_stack module
a09bc45
@RussTorres
Merge pull request #259 from AllenInstitute/FIX_MONTAGE_SCAPES
6da8768 
Fixed close_stack option in make_montage_scapes_stack module
@RussTorres
Merge pull request #258 from AllenInstitute/pixi_pyproject_test
a9c0e2f 
pixi pyproject with test task
@RussTorres
montage_qc: fix montage integration tests for new bokeh versions
d1ecf9b
RussTorres and others added 20 commits November 26, 2024 12:01
@RussTorres
montage_qc: better montage dimension setting
ffe596b
@RussTorres
montage_qc: faster pointmatch plot
86dbc69
@RussTorres
montage_qc: method to plot residuals from tspecs and point residuals
dca8060
@RussTorres
montage_qc: functional restructure to plotting
edcd9b6
@RussTorres
residual: faster mean tile residual
8b84ada
@RussTorres
montage_qc: improve detect_stitching_gaps -- speed and border polygons
5fd4407
@RussTorres
residuals: add compute residuals for object interface
2804a44
@RussTorres
montage_qc: new and object-based detect seams
d0a0cf0
@RussTorres
montage_qc: update detect_disconnected for object interface
69414ad
@RussTorres
montage_qc: add faster connected components via igraph
a27fd63
@RussTorres
montage_qc: fix save method and test
8c1f0ca
@RussTorres
montage_qc: fix html writing
5255f44
@RussTorres
montage_qc: tilespec inputs for deformation
b3892c9
@RussTorres
Merge pull request #261 from AllenInstitute/montage_qc_update
407a8ba 
montage QC update
@RussTorres
montage_qc plots: configurable max residual and pointmatch
2421eb2
@RussTorres
Merge pull request #263 from AllenInstitute/montage_qc_config
7966d4b 
montage_qc plots: configurable max residual and pointmatch
@RussTorres
pointmatch: opencv support 16bpp & patent-free SIFT
deaeff7
@RussTorres
opencv: break apart find_matches to support clientside matching
cdc9810
@RussTorres
Merge pull request #264 from AllenInstitute/opencv_pm_update
ed8fc1e 
opencv SIFT match update
@RussTorres
Merge pull request #265 from AllenInstitute/deploy_updates
ffc82b4 
Deploy updates
@RussTorres
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Waiting for resolution to #266 before merging.

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@fcollman fcollman fcollman approved these changes

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@RussTorres @fcollman @rathsidd