Fix cached iteratator bug #319
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| # This workflow will install Python dependencies, run tests and lint/formatting - possibly with a variety of Python versions - bump version, re-commit publish to PYPI | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Publish Python package | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths-ignore: | |
| - '**.yml' | |
| - '**.yaml' | |
| - '**.json' | |
| - '**.md' | |
| - '.vscode' | |
| - 'scripts' | |
| - 'tests' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
| jobs: | |
| package: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9"] | |
| permissions: write-all | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: pdm-project/setup-pdm@v3 | |
| with: | |
| version: 'head' | |
| python-version: ${{ matrix.python-version }} | |
| update-python: true | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pdm install | |
| - name: Test, format, lint | |
| env: | |
| DBHUB_API_KEY: ${{ secrets.DBHUB_API_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| CODE_OCEAN_API_TOKEN: ${{ secrets.CODE_OCEAN_API_TOKEN }} | |
| CODE_OCEAN_DOMAIN: ${{ secrets.CODE_OCEAN_DOMAIN }} | |
| FIREBASE_TOKEN: ${{ secrets.FIREBASE_TOKEN }} | |
| REDIS_DEFAULT_USER_PASSWORD: ${{ secrets.REDIS_DEFAULT_USER_PASSWORD }} | |
| run: | | |
| git clone https://github.com/alleninstitute/npc_lims | |
| mkdir .mypy_cache | |
| pdm prebuild | |
| - name: Bump project version | |
| run: | | |
| pdm bumpver | |
| - name: Publish | |
| run: | | |
| pdm publish | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| default_author: github_actions | |
| message: "Bump [skip actions]" | |
| - name: Tag commit | |
| run: | | |
| pdm tag | |
| git push --tags | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |