Bump [skip actions]

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "npc_sessions"
-version = "0.0.237"
+version = "0.0.238"
 description = "NWB-conversion for behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud."
 authors = [
     { name = "Ben Hardcastle", email = "[email protected]" },

requirements.txt

@@ -34,10 +34,9 @@ fonttools==4.53.1
 frozenlist==1.4.1
 fsspec==2024.6.0
 h5py==3.11.0
-hdmf==3.14.3
+hdmf==3.14.4
 hdmf-zarr-bjh==0.8.1.post1
 idna==3.7
-importlib-resources==6.4.2; python_version < "3.10"
 inflection==0.5.1
 jmespath==1.0.1
 jsonschema==4.23.0
@@ -54,12 +53,12 @@ mypy-extensions==1.0.0
 ndindex==1.8
 ndx-events==0.2.0
 ndx-pose==0.1.1
-npc-ephys==0.1.24
-npc-io==0.1.29
+npc-ephys==0.1.25
+npc-io==0.1.30
 npc-lims==0.1.175
 npc-mvr==0.1.7
 npc-samstim==0.1.4
-npc-session==0.1.38
+npc-session==0.1.39
 npc-stim==0.1.8
 npc-sync==0.1.18
 numba==0.60.0
@@ -75,11 +74,11 @@ polars==1.7.1
 py-cpuinfo==9.0.0
 pyarrow==17.0.0
 pycparser==2.22; platform_python_implementation != "PyPy"
-pydantic==2.8.2
-pydantic-core==2.20.1
+pydantic==2.9.2
+pydantic-core==2.23.4
 pydbhub-bjh==0.0.9
 pygments==2.18.0
-pynwb==2.8.1
+pynwb==2.8.2
 pyopenssl==24.2.1
 pyparsing==3.1.2
 python-dateutil==2.9.0.post0
@@ -90,7 +89,7 @@ redis==5.0.8
 referencing==0.35.1
 requests==2.32.3
 requests-toolbelt==1.0.0
-rich==13.7.1
+rich==13.8.1
 rpds-py==0.20.0
 ruamel-yaml==0.18.6
 ruamel-yaml-clib==0.2.8; platform_python_implementation == "CPython" and python_version < "3.13"
@@ -114,4 +113,3 @@ wavpack-numcodecs==0.1.5
 wrapt==1.16.0
 yarl==1.9.4
 zarr==2.17.2
-zipp==3.20.0; python_version < "3.10"

src/npc_sessions/sessions.py

@@ -1691,24 +1691,33 @@ def _raw_lfp(self) -> pynwb.ecephys.LFP:
                 # units=microvolts, # doesn't work - electrical series must be in volts
             )
         return lfp
-    
+
     @npc_io.cached_property
     def _subsampled_LFP(self) -> pynwb.ecephys.LFP:
         LFP = pynwb.ecephys.LFP()
         band: str = "0.5-500 Hz"
 
-        try: # only run on one session so far: '674562_2023-10-03'
-            subsampled_LFP_results = npc_ephys.get_LFP_subsampled_results(self.id, self.ephys_timing_data)
+        try:  # only run on one session so far: '674562_2023-10-03'
+            subsampled_LFP_results = npc_ephys.get_LFP_subsampled_results(
+                self.id, self.ephys_timing_data
+            )
         except FileNotFoundError:
-            logger.warning(f'{self.id} has no LFP subsampled results. Session either has not been processed or failed in codeocean')
+            logger.warning(
+                f"{self.id} has no LFP subsampled results. Session either has not been processed or failed in codeocean"
+            )
             return LFP
-        
+
         for probe in self.electrode_groups.values():
-            probe_subsampled_LFP_result = tuple(subsampled_LFP for subsampled_LFP in subsampled_LFP_results 
-                                         if subsampled_LFP.probe.lower() == probe.name.lower())
-
+            probe_subsampled_LFP_result = tuple(
+                subsampled_LFP
+                for subsampled_LFP in subsampled_LFP_results
+                if subsampled_LFP.probe.lower() == probe.name.lower()
+            )
+
             if not probe_subsampled_LFP_result:
-                logger.warning(f'{probe.name} has no subsampled LFP result. Possibly no surface channel for {probe.name}. Check codeocean. Skipping')
+                logger.warning(
+                    f"{probe.name} has no subsampled LFP result. Possibly no surface channel for {probe.name}. Check codeocean. Skipping"
+                )
                 continue
 
             probe_subsampled_LFP = probe_subsampled_LFP_result[0]
@@ -1732,7 +1741,7 @@ def _subsampled_LFP(self) -> pynwb.ecephys.LFP:
                 description=f"temporal and spatial subsampled local field potential-band voltage timeseries ({band}) from electrodes on {probe.name} with sampling rate {probe_subsampled_LFP.sampling_rate} across {len(probe_subsampled_LFP.channel_ids)} channels",
                 # units=microvolts, # doesn't work - electrical series must be in volts
             )
-        
+
         return LFP
 
     # images -------------------------------------------------------------------- #