Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by computing skeleton-based metrics.
Python 6
Repositories
- aind-metadata-validator Public
Package to support validation checks for aind-data-schema for export to other services
AllenNeuralDynamics/aind-metadata-validator’s past year of commit activity - aind-smartspim-classification Public
Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline
AllenNeuralDynamics/aind-smartspim-classification’s past year of commit activity - aind-smartspim-quantification Public
Takes the output of segmentation and ccf registration to calculate cell counts per brain region
AllenNeuralDynamics/aind-smartspim-quantification’s past year of commit activity - aind-ccf-registration Public
Registration of lightsheet whole brain images to the Allen CCF V3 Atlas
AllenNeuralDynamics/aind-ccf-registration’s past year of commit activity
