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A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

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arXiv

ImmunoHisto Benchmark

We assess performance of histopathology foundation models trained on H&E cancer dataset on OOD Immunohistochemistry (IHC) autoimmune datasets.

Models benchmarked

models_benchmarked.png

Results

drawing drawing

drawing

How to run the code (WIP)

Basic Usage

  1. Set up your configuration file (e.g., RA_config.yaml)
  2. Run the complete pipeline:
python main.py --config RA_config.yaml --preprocess --train --test --visualise

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A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

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