This repository contains a Python package called arcadia_microscopy_tools. The purpose of this Python package is for facilitating analysis of large-scale microscopy datasets generated by Arcadia's imaging suite which includes several microscopes:
- Nikon ECLIPSE Ti2-E (Hina)
- Nikon ECLIPSE Ni-E (Babu Frik)
- Leica Stellaris 8 (The Borg)
This package provides tooling for image preprocessing, cell/particle segmentation, morphology analysis, fluorescence quantification, and batch processing pipelines. Supports native file formats (ND2 via nd2 and LIF via readlif) and integrates with popular scientific Python libraries for streamlined high-content screening and quantitative microscopy workflows.
pip install git+https://github.com/Arcadia-Science/arcadia-microscopy-tools.git[DOCUMENTATION ABOUT HOW TO USE THE PACKAGE]