v1.5.0

1.5.0 - 2024-01-19

Features

• Added new cleanup action: DropMappingsByParserNameRankAction
• Added new disambiguation strategy: PreferNearestEmbeddingToDefaultLabelDisambiguationStrategy.
• DefinedElsewhereInDocumentDisambiguationStrategy has slightly changed, so that it will only return mappings that were found elsewhere in the document, rather than the whole EquivalentIdSet where those ids were contained
• New disambiguation methodology GildaTfIdfDisambiguationStrategy.
• OpenTargetsTargetOntologyParser now has a biotype filter parameter.

Deprecations and Removals

• Deprecated GildaUtils.replace_dashes in favour of GildaUtils.split_on_dashes_or_space, as the latter improves efficiency in Kazu.
  GildaUtils.replace_dashes will continue to work until kazu 1.6, but using it will produce a DeprecationWarning.
  Please open a GitHub issue if you wish this to remain.