Testing removing setup.py for pyproject.toml

conda/meta.yaml

@@ -10,7 +10,7 @@ build:
   preserve_egg_dir: True
   string: phenomenal
   script:
-    - {{ PYTHON }} setup.py install --single-version-externally-managed --record record.txt
+    - {{ PYTHON }} setup.py.bak install --single-version-externally-managed --record record.txt
 
 requirements:
 

pyproject.toml

@@ -0,0 +1,53 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "openalea.phenomenal"
+authors = [
+    {name = "Simon Artzet", email = "[email protected]"},
+    {name = "Christian Fournier"},
+    {name = "Brichet Nicolas"},
+    {name = "Chopard Jerome"},
+    {name = "Mielewczik Michael"},
+    {name = "Christophe Pradal"},
+]
+license = {file = "LICENSE.txt"}
+description = ""
+requires-python = ">=3.9"
+keywords = ["openalea"]
+classifiers = [
+    'Intended Audience :: Science/Research',
+    'Intended Audience :: Developers',
+    "Programming Language :: Python :: 3",
+    'Programming Language :: Python :: 3.9',
+    'Programming Language :: Python :: 3.10',
+    'Programming Language :: Python :: 3.11',
+    'Programming Language :: Python :: 3.12',
+]
+dependencies = [
+    'numpy',
+    'cython',
+    'numba',
+    'pandas',
+    'opencv_python',
+    'scipy',
+    'scikit-image',
+    'scikit-learn',
+    'networkx',
+    'matplotlib',
+    'vtk',
+    'pytest',
+]
+dynamic = ["version", "readme"]
+
+
+[tool.setuptools.dynamic]
+version = {attr = "openalea.phenomenal.__version__"}
+readme = {file = ["README.md"]}
+
+[tool.setuptools.packages.find]
+where = ["src"]  # list of folders that contain the packages (["."] by default)
+include = ["openalea.phenomenal*"]  # package names should match these glob patterns (["*"] by default)
+exclude = ["test*"]  # exclude packages matching these glob patterns (empty by default)
+namespaces = false  # to disable scanning PEP 420 namespaces (true by default)

setup.py → setup.py.bak

@@ -1,79 +1,46 @@
-# -*- python -*-
-#
-#       Copyright INRIA - CIRAD - INRA
-#
-#       File author(s):
-#
-#       File contributor(s):
-#
-#       Distributed under the Cecill-C License.
-#       See accompanying file LICENSE.txt or copy at
-#           http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html
-#
-#       OpenAlea WebSite : http://openalea.gforge.inria.fr
-#
-# ==============================================================================
-"""
-"""
-# ==============================================================================
-import numpy
-from Cython.Build import cythonize
-from setuptools import setup, find_packages, Extension, Command
-# ==============================================================================
-
-namespace = "openalea"
-pkg_root_dir = 'src'
-packages = [pkg for pkg in find_packages(pkg_root_dir)]
-top_pkgs = [pkg for pkg in packages if len(pkg.split('.')) <= 2]
-package_dir = dict([('', pkg_root_dir)] +
-                   [(pkg, pkg_root_dir + "/" + pkg.replace('.', '/'))
-                    for pkg in top_pkgs])
-
-
-extentions = [
-    Extension('openalea.phenomenal.segmentation._c_skeleton',
-        sources=['src/openalea/phenomenal/segmentation/src/skeleton.pyx',
-             'src/openalea/phenomenal/segmentation/src/skel.cpp'],
-        include_dirs=[numpy.get_include()],
-        language="c++"),
-    Extension('openalea.phenomenal.multi_view_reconstruction._c_mvr',
-        sources=['src/openalea/phenomenal/multi_view_reconstruction/src/c_mvr.pyx',
-                 'src/openalea/phenomenal/multi_view_reconstruction/src/integral_image.cpp'],
-        include_dirs=[numpy.get_include()],
-        language="c++")
-        ]
-
-setup(
-    name="openalea.phenomenal",
-    version="1.8.1",
-    description="",
-    long_description="",
-
-    author="* Simon Artzet\n"
-           "* Christian Fournier\n"
-           "* Mielewczik Michael\n"
-           "* Brichet Nicolas\n"
-           "* Chopard Jerome\n"
-           "* Christophe Pradal\n",
-
-    author_email="[email protected]",
-    maintainer="Simon Artzet",
-    maintainer_email="[email protected]",
-
-    url="https://github.com/openalea/phenomenal",
-    license="Cecill-C",
-    keywords='',
-
-    # package installation
-    packages=packages,
-    package_dir=package_dir,
-    zip_safe=False,
-    ext_modules=cythonize(extentions),
-
-    entry_points={
-        "wralea": ["openalea.phenomenal = openalea.phenomenal_wralea", ],
-    },
-
-    # See MANIFEST.in
-    include_package_data=True,
-    )
+# -*- python -*-
+#
+#       Copyright INRIA - CIRAD - INRA
+#
+#       File author(s):
+#
+#       File contributor(s):
+#
+#       Distributed under the Cecill-C License.
+#       See accompanying file LICENSE.txt or copy at
+#           http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html
+#
+#       OpenAlea WebSite : http://openalea.gforge.inria.fr
+#
+# ==============================================================================
+"""
+"""
+# ==============================================================================
+import numpy
+from Cython.Build import cythonize
+from setuptools import setup, Extension
+# ==============================================================================
+
+
+extentions = [
+    Extension('openalea.phenomenal.segmentation._c_skeleton',
+        sources=['src/openalea/phenomenal/segmentation/src/skeleton.pyx',
+             'src/openalea/phenomenal/segmentation/src/skel.cpp'],
+        include_dirs=[numpy.get_include()],
+        language="c++"),
+    Extension('openalea.phenomenal.multi_view_reconstruction._c_mvr',
+        sources=['src/openalea/phenomenal/multi_view_reconstruction/src/c_mvr.pyx',
+                 'src/openalea/phenomenal/multi_view_reconstruction/src/integral_image.cpp'],
+        include_dirs=[numpy.get_include()],
+        language="c++")
+        ]
+
+setup(
+    name="openalea.phenomenal",
+    ext_modules=cythonize(extentions),
+    entry_points={
+        "wralea": ["openalea.phenomenal = openalea.phenomenal_wralea", ],
+    },
+    # See MANIFEST.in
+    include_package_data=True,
+    )

src/openalea/phenomenal/__init__.py

@@ -7,3 +7,4 @@
 #           http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html
 #
 # ==============================================================================
+from .version import __version__

src/openalea/phenomenal/version.py

@@ -0,0 +1,5 @@
+major = 1
+minor = 8
+post = 2
+
+__version__ = ".".join([str(s) for s in (major, minor, post)])