Skip to content

Adding GATK concordance script (connected to #167) #173

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Open
wants to merge 8 commits into
base: master
Choose a base branch
from
Open

Adding GATK concordance script (connected to #167) #173

wants to merge 8 commits into from

Conversation

@heuermh
Copy link
Member

@heuermh heuermh commented Mar 14, 2016

Work towards #167, still needs to be tested.

@heuermh heuermh changed the title first checked in Adding GATK concordance script Mar 14, 2016
@hannes-ucsc hannes-ucsc changed the title Adding GATK concordance script Adding GATK concordance script (resolves #167) Mar 14, 2016
@hannes-ucsc
Copy link
Contributor

Fixed title and added needs work label. Let me know if any of these changes are inaccurate.

fnothaft
fnothaft reviewed Mar 14, 2016
View reviewed changes
src/toil_scripts/gatk_concordance/gatk_concordance.py Outdated
return parser


# copied from germline.py
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

NONONONONONONONONONONONONONONO! No copying!

:)

@fnothaft fnothaft changed the title Adding GATK concordance script (resolves #167) Adding GATK concordance script Mar 16, 2016
@fnothaft
Copy link
Contributor

I've removed the "Resolves #167" title, as we still need liftover code. @heuermh will you add VCF liftover to this, or open a new PR with it? I'd probably prefer a new PR.

@heuermh
Copy link
Member Author

heuermh commented Mar 16, 2016

Sure, in a new PR

@hannes-ucsc hannes-ucsc changed the title Adding GATK concordance script Adding GATK concordance script (connected to #167) Mar 16, 2016
@hannes-ucsc
Copy link
Contributor

In that case the connected to linkage is recommended. It's used by Waffle to stack PRs and issues.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

in progress needs work spark/adam

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

3 participants

@heuermh @hannes-ucsc @fnothaft