more BEAST compatibility stuff

BEAST2-Dev · Jun 19, 2019 · 3338577 · 3338577
1 parent 25317fe
commit 3338577
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/src/beast/app/beauti/BeautiDiscreteTraitProvider.java b/src/beast/app/beauti/BeautiDiscreteTraitProvider.java
@@ -34,7 +34,7 @@
 public class BeautiDiscreteTraitProvider extends BeautiAlignmentProvider {
 
 	@Override
-	protected List<BEASTInterface> getAlignments(BeautiDoc doc) {
+	public List<BEASTInterface> getAlignments(BeautiDoc doc) {
 		try {
             List<String> trees = new ArrayList<String>();
             doc.scrubAll(true, false);

diff --git a/src/beast/app/beauti/BeautiLocationTraitProvider.java b/src/beast/app/beauti/BeautiLocationTraitProvider.java
@@ -25,7 +25,7 @@
 public class BeautiLocationTraitProvider extends BeautiAlignmentProvider {
 
 	@Override
-	protected List<BEASTInterface> getAlignments(BeautiDoc doc) {
+	public List<BEASTInterface> getAlignments(BeautiDoc doc) {
 		try {
             List<String> trees = new ArrayList<String>();
             doc.scrubAll(true, false);

diff --git a/src/test/beast/app/beauti/BeautiDiscretePhylogeographyTest.java b/src/test/beast/app/beauti/BeautiDiscretePhylogeographyTest.java
@@ -97,12 +97,12 @@ public void discretePhylogeographyTestTutorial() throws Exception {
 			// 3. Fix clock rate
 			warning("3. Fix clock rate");
 			f.selectTab("Clock Model");
-			beautiFrame.menuItemWithPath("Mode", "Automatic set clock rate").click();
+//			beautiFrame.menuItemWithPath("Mode", "Automatic set clock rate").click();
 			beautiFrame.textBox("clock.rate").setText("0.004");
 			beautiFrame.checkBox("clock.rate.isEstimated").click();
 			printBeautiState(f);
 
-			beautiFrame.menuItemWithPath("Mode").click();
+//			beautiFrame.menuItemWithPath("Mode").click();
 			screenshotTaker.saveComponentAsPng(beauti.frame, PREFIX + "clockmodel.png");
 
 			// 4. Set tree prior