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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 251 33

  2. compgen2021 compgen2021 Public

    R 73 23

  3. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 71 22

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 48 20

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 41 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 30 9

Repositories

Showing 10 of 96 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 3 0 13 (1 issue needs help) 0 Updated Jun 27, 2024
  • mergen Public

    AI-Driven Code Generation, Explanation and Execution for Data Analysis

    BIMSBbioinfo/mergen’s past year of commit activity
    R 4 0 0 0 Updated Jun 27, 2024
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 30 9 1 0 Updated Jun 26, 2024
  • BIMSBbioinfo/mergenstudio’s past year of commit activity
    R 2 0 0 1 Updated Jun 26, 2024
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 0 0 1 0 Updated Jun 23, 2024
  • scmaui-experiments Public

    Tutorials for scMaui

    BIMSBbioinfo/scmaui-experiments’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 17, 2024
  • Compass Public

    Official Implementation of Compass

    BIMSBbioinfo/Compass’s past year of commit activity
    Python 3 0 0 0 Updated Jun 15, 2024
  • ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    BIMSBbioinfo/ikarus’s past year of commit activity
    HTML 41 MIT 12 1 1 Updated Jun 7, 2024
  • tibanna-bimsb Public Forked from 4dn-dcic/tibanna

    Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

    BIMSBbioinfo/tibanna-bimsb’s past year of commit activity
    Python 0 MIT 27 0 0 Updated May 31, 2024
  • pigx_rnaseq Public

    Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

    BIMSBbioinfo/pigx_rnaseq’s past year of commit activity
    Python 20 GPL-3.0 11 22 0 Updated May 27, 2024