pydicom biomedical examples

This repository only contains a few examples of use pydicom to handle some DICOM files.

Requirements

• Python3
• pip
• python3-venv
• DICOM samples (this repository does not supply any DICOM file samples)

How to use?

If you would like to use virtual env, run the following commands:

python3 -m venv dicomenv # this creates your enviroment 
source dicomenv/bin/activate # this activate your enviroment

Now, all dependencies that you install will be located in dicomenv directory. Try to install them:

pip3 install -r requirements.txt

To run examples, you can try the follow command line executions.

python3 wsi_sample.py

python3 lsm_sample.py