Merge branch 'master' into debug_spliceai_merge

BRCAChallenge · Oct 24, 2023 · 254b86b · 254b86b
2 parents 9d91714 + 304f403
commit 254b86b
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/pipeline/workflow/CompileVCFFiles.py b/pipeline/workflow/CompileVCFFiles.py
@@ -722,7 +722,7 @@ def run(self):
             self.input().path,
             self.output().path)
 
-        os.chdir(artifacts_dir_host)
+        os.chdir(self.artifacts_dir)
         os.remove("ready_for_priors.tsv")
 
 

diff --git a/pipeline/workflow/tarball_files_discard_list.txt b/pipeline/workflow/tarball_files_discard_list.txt
@@ -5,7 +5,6 @@
 ./release/artifacts/bayesdel.vcf
 ./release/artifacts/BICready.vcf
 ./release/artifacts/BIC.vcf
-./release/artifacts/variants_with_splice_ai.vcf
 ./release/artifacts/built.tsv
 ./release/artifacts/built_with_bayesdel.tsv
 ./release/artifacts/built_with_spliceai.tsv

diff --git a/pipeline/workflow/tarball_files_keep_list.txt b/pipeline/workflow/tarball_files_keep_list.txt
@@ -22,6 +22,7 @@
 ./release/artifacts/missing_reports.log
 ./release/artifacts/reports.tsv
 ./release/artifacts/variant_merging.log
+./release/artifacts/variants_with_splice_ai.vcf
 ./release/artifacts/victor_annotation.log
 ./release/artifacts/wrong_genome_coors/1000_Genomes_wrong_genome_coor.vcf
 ./release/artifacts/wrong_genome_coors/BIC_wrong_genome_coor.vcf